Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3862

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
4,032,274	+				-1.9
4,032,274	+				+0.2
4,032,274	+				-0.6
4,032,275	-				-0.5
4,032,275	-				+1.2
4,032,275	-				-0.0
4,032,275	-				+0.7
4,032,310	+				-0.8
4,032,415	+				-1.0
4,032,415	+				-0.0
4,032,416	-				-1.5
4,032,439	+				+0.2
4,032,440	-				-0.8
4,032,440	-				-0.4
4,032,712	+		Psest_3861	0.35	-0.1
4,032,712	+		Psest_3861	0.35	-1.6
4,032,712	+		Psest_3861	0.35	-0.6
4,032,713	-		Psest_3861	0.35	+0.9
4,032,713	-		Psest_3861	0.35	-0.6
4,032,743	-		Psest_3861	0.39	-0.4
4,032,775	+		Psest_3861	0.43	+0.3
4,032,776	-		Psest_3861	0.43	-0.0
4,032,776	-		Psest_3861	0.43	+2.2
4,032,776	-		Psest_3861	0.43	-0.4
4,032,776	-		Psest_3861	0.43	-1.6
4,033,069	-		Psest_3861	0.82	+0.4
4,033,278	+				+2.2
4,033,278	+				-1.8
4,033,279	-				+0.2
4,033,541	+		Psest_3862	0.14	-1.4
4,033,542	-		Psest_3862	0.14	-0.1
4,033,542	-		Psest_3862	0.14	-0.8
4,033,542	-		Psest_3862	0.14	-1.8
4,033,547	+		Psest_3862	0.15	-3.2
4,033,547	+		Psest_3862	0.15	-2.1
4,033,548	-		Psest_3862	0.15	+0.0
4,033,592	+		Psest_3862	0.17	+0.1
4,033,592	+		Psest_3862	0.17	-0.6
4,033,592	+		Psest_3862	0.17	-1.2
4,033,592	+		Psest_3862	0.17	-0.4
4,033,593	-		Psest_3862	0.17	-0.5
4,033,593	-		Psest_3862	0.17	+0.2
4,033,659	-		Psest_3862	0.20	-1.9
4,033,659	-		Psest_3862	0.20	-1.9
4,033,659	-		Psest_3862	0.20	-0.9
4,033,935	-		Psest_3862	0.32	+0.0
4,033,935	-		Psest_3862	0.32	-1.6
4,033,935	-		Psest_3862	0.32	-0.0
4,034,015	+		Psest_3862	0.35	-1.3
4,034,016	-		Psest_3862	0.35	-0.4
4,034,016	-		Psest_3862	0.35	-1.1
4,034,016	-		Psest_3862	0.35	-1.6
4,034,089	+		Psest_3862	0.39	-0.4
4,034,090	-		Psest_3862	0.39	-0.8
4,034,200	+		Psest_3862	0.43	-0.8
4,034,200	+		Psest_3862	0.43	-1.0
4,034,200	+		Psest_3862	0.43	-0.4
4,034,200	+		Psest_3862	0.43	-1.9
4,034,200	+		Psest_3862	0.43	-0.2
4,034,200	+		Psest_3862	0.43	+1.2
4,034,200	+		Psest_3862	0.43	-0.6
4,034,201	-		Psest_3862	0.43	-1.5
4,034,201	-		Psest_3862	0.43	-1.0
4,034,201	-		Psest_3862	0.43	-1.1
4,034,201	-		Psest_3862	0.43	-1.3
4,034,201	-		Psest_3862	0.43	-1.4
4,034,201	-		Psest_3862	0.43	-0.7
4,034,201	-		Psest_3862	0.43	-1.2
4,034,201	-		Psest_3862	0.43	-0.8
4,034,201	-		Psest_3862	0.43	-0.6
4,034,249	+		Psest_3862	0.46	-1.6
4,034,249	+		Psest_3862	0.46	-0.6
4,034,250	-		Psest_3862	0.46	-0.8
4,034,371	-		Psest_3862	0.51	-1.8
4,034,510	+		Psest_3862	0.57	-0.8
4,034,510	+		Psest_3862	0.57	-1.5
4,034,511	-		Psest_3862	0.57	-0.4
4,034,511	-		Psest_3862	0.57	+0.6
4,034,543	+		Psest_3862	0.58	-1.7
4,034,543	+		Psest_3862	0.58	-0.8
4,034,597	+		Psest_3862	0.61	-0.6
4,034,597	+		Psest_3862	0.61	+0.6
4,034,732	+		Psest_3862	0.67	-3.1
4,034,732	+		Psest_3862	0.67	-1.0
4,034,732	+		Psest_3862	0.67	-1.3
4,034,733	-		Psest_3862	0.67	-1.0
4,034,733	-		Psest_3862	0.67	-1.0
4,035,027	+		Psest_3862	0.80	-1.1
4,035,027	+		Psest_3862	0.80	-1.0
4,035,027	+		Psest_3862	0.80	-0.5
4,035,116	-		Psest_3862	0.84	-0.6
4,035,194	+		Psest_3862	0.87	-1.8
4,035,194	+		Psest_3862	0.87	-3.0
4,035,194	+		Psest_3862	0.87	+0.6
4,035,194	+		Psest_3862	0.87	-1.8
4,035,365	+				-2.1
4,035,365	+				-1.3
4,035,365	+				-0.9
4,035,365	+				-0.8
4,035,366	-				-0.1
4,035,996	-				+0.5
4,035,996	-				+1.0
4,036,042	+				-1.6
4,036,132	+				+0.1
4,036,186	-				-3.9
4,036,241	+		Psest_3864	0.11	-4.1
4,036,241	+		Psest_3864	0.11	-3.9
4,036,242	-		Psest_3864	0.11	-3.5
4,036,277	+		Psest_3864	0.16	-2.6
4,036,277	+		Psest_3864	0.16	-3.2
4,036,277	+		Psest_3864	0.16	-2.4
4,036,278	-		Psest_3864	0.16	-3.9
4,036,301	+		Psest_3864	0.20	-3.8
4,036,301	+		Psest_3864	0.20	-1.1
4,036,301	+		Psest_3864	0.20	-1.9
4,036,301	+		Psest_3864	0.20	-2.5
4,036,301	+		Psest_3864	0.20	-4.2
4,036,302	-		Psest_3864	0.20	-3.7
4,036,302	-		Psest_3864	0.20	-1.9
4,036,302	-		Psest_3864	0.20	-1.6
4,036,302	-		Psest_3864	0.20	-3.4
4,036,302	-		Psest_3864	0.20	-2.8
4,036,310	+		Psest_3864	0.21	-2.9
4,036,310	+		Psest_3864	0.21	-0.8
4,036,310	+		Psest_3864	0.21	-1.6
4,036,310	+		Psest_3864	0.21	-0.8
4,036,311	-		Psest_3864	0.21	-0.8