Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0367 and Psest_0368 are separated by 399 nucleotides Psest_0368 and Psest_0369 are separated by 102 nucleotides
Psest_0367: Psest_0367 - Predicted branched-chain amino acid permease (azaleucine resistance), at 392,835 to 393,551
_0367
Psest_0368: Psest_0368 - Transcriptional regulator, at 393,951 to 394,865
_0368
Psest_0369: Psest_0369 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 394,968 to 396,110
_0369
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 393.256 kb on + strand, within Psest_0367 at 393.256 kb on + strand, within Psest_0367 at 393.620 kb on + strand at 393.620 kb on + strand at 393.620 kb on + strand at 393.621 kb on - strand at 393.621 kb on - strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.718 kb on + strand at 393.737 kb on - strand at 393.737 kb on - strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.740 kb on + strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.741 kb on - strand at 393.749 kb on + strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.750 kb on - strand at 393.952 kb on + strand at 394.102 kb on - strand, within Psest_0368 at 394.283 kb on - strand, within Psest_0368 at 394.749 kb on + strand, within Psest_0368 at 394.836 kb on - strand at 394.980 kb on + strand at 394.980 kb on + strand at 394.980 kb on + strand at 394.980 kb on + strand at 395.059 kb on + strand at 395.059 kb on + strand at 395.060 kb on - strand at 395.132 kb on + strand, within Psest_0369 at 395.133 kb on - strand, within Psest_0369 at 395.151 kb on + strand, within Psest_0369 at 395.151 kb on + strand, within Psest_0369 at 395.181 kb on + strand, within Psest_0369 at 395.182 kb on - strand, within Psest_0369 at 395.182 kb on - strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 393,256 + Psest_0367 0.59 -0.1 393,256 + Psest_0367 0.59 +0.5 393,620 + -1.6 393,620 + -0.6 393,620 + +1.2 393,621 - -0.4 393,621 - +0.5 393,718 + +0.2 393,718 + +0.2 393,718 + -1.4 393,718 + +2.0 393,718 + +0.2 393,737 - -0.4 393,737 - -0.5 393,740 + +1.2 393,740 + +1.2 393,740 + -0.8 393,740 + -1.1 393,741 - -1.6 393,741 - -0.5 393,741 - -0.4 393,741 - +0.6 393,749 + +2.0 393,750 - -0.8 393,750 - -0.8 393,750 - +1.8 393,750 - +0.5 393,952 + +0.4 394,102 - Psest_0368 0.17 -1.1 394,283 - Psest_0368 0.36 -0.8 394,749 + Psest_0368 0.87 +0.1 394,836 - +2.2 394,980 + +0.0 394,980 + -0.1 394,980 + +0.9 394,980 + +0.2 395,059 + +0.6 395,059 + -0.6 395,060 - -0.4 395,132 + Psest_0369 0.14 +0.0 395,133 - Psest_0369 0.14 +1.0 395,151 + Psest_0369 0.16 +0.0 395,151 + Psest_0369 0.16 +1.2 395,181 + Psest_0369 0.19 -0.4 395,182 - Psest_0369 0.19 -1.1 395,182 - Psest_0369 0.19 +0.1 395,406 + Psest_0369 0.38 +0.7 395,406 + Psest_0369 0.38 +1.4 395,406 + Psest_0369 0.38 -0.2 395,406 + Psest_0369 0.38 -2.4 395,406 + Psest_0369 0.38 +0.5 395,406 + Psest_0369 0.38 +0.2 395,407 - Psest_0369 0.38 +1.4 395,407 - Psest_0369 0.38 +1.2 395,407 - Psest_0369 0.38 -1.2 395,407 - Psest_0369 0.38 -0.0 395,407 - Psest_0369 0.38 +0.6
Or see this region's nucleotide sequence