Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0358 and Psest_0359 are separated by 116 nucleotides Psest_0359 and Psest_0360 are separated by 57 nucleotides
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.442 kb on - strand at 385.470 kb on + strand at 385.470 kb on + strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.497 kb on + strand at 385.506 kb on + strand at 385.520 kb on + strand at 385.521 kb on - strand at 386.190 kb on + strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.566 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 384,814 + Psest_0358 0.61 -0.4 384,814 + Psest_0358 0.61 +0.2 384,814 + Psest_0358 0.61 +0.6 384,815 - Psest_0358 0.61 -0.4 384,815 - Psest_0358 0.61 -0.6 384,815 - Psest_0358 0.61 -1.8 384,922 + Psest_0358 0.67 +1.2 384,922 + Psest_0358 0.67 +3.5 384,922 + Psest_0358 0.67 -0.1 384,922 + Psest_0358 0.67 +0.5 384,923 - Psest_0358 0.68 +0.6 384,923 - Psest_0358 0.68 +1.2 384,923 - Psest_0358 0.68 +0.4 384,923 - Psest_0358 0.68 -0.4 384,923 - Psest_0358 0.68 -0.0 384,923 - Psest_0358 0.68 -0.6 384,923 - Psest_0358 0.68 -0.1 384,923 - Psest_0358 0.68 +0.8 384,923 - Psest_0358 0.68 +0.9 384,949 + Psest_0358 0.69 -0.4 384,949 + Psest_0358 0.69 -0.1 384,950 - Psest_0358 0.69 -0.2 384,950 - Psest_0358 0.69 -0.2 384,950 - Psest_0358 0.69 +1.2 384,959 - Psest_0358 0.70 -0.2 384,959 - Psest_0358 0.70 +1.2 385,285 + -0.1 385,285 + -1.4 385,285 + -0.4 385,285 + +2.0 385,285 + +0.2 385,285 + +3.2 385,285 + +1.2 385,285 + -1.1 385,286 - -1.1 385,286 - +1.2 385,286 - +1.2 385,286 - +0.2 385,286 - +1.2 385,442 - -0.6 385,470 + +0.2 385,470 + +0.5 385,471 - -0.1 385,471 - -1.0 385,471 - -0.6 385,471 - +0.2 385,497 + -0.1 385,506 + -0.4 385,520 + +1.2 385,521 - -0.4 386,190 + Psest_0359 0.84 +2.2 386,191 - Psest_0359 0.84 -0.8 386,191 - Psest_0359 0.84 -2.8 386,191 - Psest_0359 0.84 -0.4 386,191 - Psest_0359 0.84 -2.0 386,566 + Psest_0360 0.22 +2.2 386,676 + Psest_0360 0.34 -0.4 386,676 + Psest_0360 0.34 +0.2 386,676 + Psest_0360 0.34 -0.6 386,676 + Psest_0360 0.34 +0.2 386,677 - Psest_0360 0.34 +1.2 386,677 - Psest_0360 0.34 +1.2 386,677 - Psest_0360 0.34 +0.8 386,677 - Psest_0360 0.34 +0.6 386,677 - Psest_0360 0.34 +0.2 386,677 - Psest_0360 0.34 +2.2 387,005 - Psest_0360 0.70 +0.7 387,005 - Psest_0360 0.70 -0.4 387,005 - Psest_0360 0.70 +0.8 387,005 - Psest_0360 0.70 +1.6 387,005 - Psest_0360 0.70 -1.1 387,005 - Psest_0360 0.70 -1.6 387,005 - Psest_0360 0.70 +1.2 387,154 - Psest_0360 0.87 -1.0 387,154 - Psest_0360 0.87 +1.0 387,154 - Psest_0360 0.87 -0.1 387,284 - +0.2
Or see this region's nucleotide sequence