Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0347 and Psest_0348 are separated by 97 nucleotides Psest_0348 and Psest_0349 are separated by 178 nucleotides Psest_0349 and Psest_0350 overlap by 4 nucleotides
Psest_0347: Psest_0347 - large component of pyruvate/D-alanine transporter (actP-like) <small>(from data)</small>, at 370,231 to 372,000
_0347
Psest_0348: Psest_0348 - hypothetical protein, at 372,098 to 372,616
_0348
Psest_0349: Psest_0349 - DNA polymerase III, alpha subunit (gram-positive type), at 372,795 to 373,502
_0349
Psest_0350: Psest_0350 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 373,499 to 375,433
_0350
Position (kb) 372
373
374 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 371.899 kb on + strand at 371.998 kb on + strand at 372.005 kb on + strand at 372.005 kb on + strand at 372.005 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.049 kb on - strand at 372.049 kb on - strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.111 kb on + strand at 372.111 kb on + strand at 372.111 kb on + strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.179 kb on - strand, within Psest_0348 at 372.233 kb on + strand, within Psest_0348 at 372.233 kb on + strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.246 kb on - strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.371 kb on - strand, within Psest_0348 at 372.371 kb on - strand, within Psest_0348 at 372.587 kb on + strand at 372.587 kb on + strand at 372.588 kb on - strand at 372.595 kb on + strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.959 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.974 kb on - strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.289 kb on - strand, within Psest_0349 at 373.384 kb on - strand, within Psest_0349 at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.274 kb on + strand, within Psest_0350 at 374.275 kb on - strand, within Psest_0350
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 371,899 + -2.0 371,998 + +0.1 372,005 + +0.4 372,005 + +0.5 372,005 + +0.6 372,048 + +0.4 372,048 + +0.1 372,048 + -0.2 372,048 + -0.3 372,048 + -0.2 372,048 + +0.4 372,048 + +0.5 372,049 - +0.9 372,049 - -1.5 372,095 + -1.0 372,095 + -0.9 372,095 + -0.2 372,095 + +1.9 372,095 + -1.7 372,095 + -0.6 372,095 + +0.2 372,095 + -0.6 372,095 + +2.8 372,095 + -0.7 372,095 + -1.1 372,095 + -0.1 372,095 + -2.5 372,095 + -1.0 372,095 + +0.2 372,095 + -0.8 372,095 + -0.2 372,095 + -0.1 372,095 + -3.3 372,095 + +0.1 372,095 + -0.4 372,095 + +1.2 372,095 + +0.1 372,095 + +0.2 372,095 + +0.6 372,095 + -0.7 372,095 + -0.6 372,095 + -0.6 372,095 + -1.0 372,095 + +0.6 372,095 + +0.0 372,095 + -0.4 372,095 + +0.6 372,096 - -0.2 372,096 - +0.2 372,096 - +0.3 372,096 - +0.8 372,096 - -0.3 372,096 - -0.9 372,096 - +0.2 372,096 - +0.0 372,096 - +0.4 372,096 - +0.5 372,096 - -0.2 372,096 - +0.2 372,096 - +1.9 372,096 - -0.1 372,096 - -1.4 372,096 - -0.2 372,096 - -0.5 372,096 - -0.0 372,096 - +0.2 372,096 - -1.0 372,097 + +0.7 372,097 + -0.2 372,097 + +0.2 372,097 + -0.2 372,097 + -0.1 372,097 + +0.1 372,097 + +0.1 372,097 + +0.5 372,097 + +0.3 372,097 + +0.2 372,097 + +0.5 372,097 + +2.4 372,097 + +0.7 372,097 + +0.3 372,097 + +0.3 372,097 + -0.6 372,097 + -2.3 372,097 + -1.5 372,097 + +0.6 372,097 + -0.7 372,097 + +0.7 372,097 + -1.1 372,098 - +0.0 372,098 - -1.4 372,098 - -0.5 372,098 - -1.0 372,098 - +1.2 372,098 - -0.0 372,098 - -0.0 372,098 - -0.7 372,098 - -1.0 372,098 - -0.8 372,098 - -4.3 372,098 - -0.4 372,098 - +0.0 372,098 - +0.1 372,098 - -1.4 372,111 + +0.1 372,111 + -0.2 372,111 + -0.0 372,112 - +0.2 372,112 - +0.2 372,112 - +1.2 372,112 - -0.6 372,179 - Psest_0348 0.16 -0.1 372,233 + Psest_0348 0.26 -0.1 372,233 + Psest_0348 0.26 -1.0 372,234 - Psest_0348 0.26 +0.0 372,234 - Psest_0348 0.26 -0.4 372,234 - Psest_0348 0.26 -0.4 372,246 - Psest_0348 0.29 +1.2 372,368 + Psest_0348 0.52 -1.2 372,368 + Psest_0348 0.52 +2.2 372,368 + Psest_0348 0.52 +0.2 372,370 + Psest_0348 0.52 -0.1 372,370 + Psest_0348 0.52 -0.1 372,370 + Psest_0348 0.52 -0.6 372,371 - Psest_0348 0.53 +0.1 372,371 - Psest_0348 0.53 -1.1 372,587 + -2.7 372,587 + +0.2 372,588 - -0.2 372,595 + -0.1 372,596 - -0.1 372,596 - -0.6 372,596 - -1.4 372,618 + +0.8 372,618 + -0.9 372,618 + -0.6 372,618 + -0.4 372,618 + -1.6 372,618 + -0.4 372,618 + +0.6 372,760 - +0.4 372,760 - -0.6 372,760 - +0.6 372,959 + Psest_0349 0.23 -1.5 372,973 + Psest_0349 0.25 +0.2 372,973 + Psest_0349 0.25 -1.1 372,973 + Psest_0349 0.25 -2.0 372,974 - Psest_0349 0.25 +0.2 373,023 + Psest_0349 0.32 -1.6 373,023 + Psest_0349 0.32 -1.8 373,023 + Psest_0349 0.32 -2.6 373,024 - Psest_0349 0.32 -0.8 373,024 - Psest_0349 0.32 -1.0 373,024 - Psest_0349 0.32 -1.1 373,024 - Psest_0349 0.32 -0.1 373,024 - Psest_0349 0.32 -0.7 373,289 - Psest_0349 0.70 -2.8 373,384 - Psest_0349 0.83 -0.9 373,496 + +0.8 373,496 + -0.4 373,496 + -0.0 373,496 + -0.9 373,496 + -0.8 373,496 + +0.1 373,496 + -0.5 373,496 + +0.7 373,496 + -0.8 373,496 + -0.9 373,497 - +0.6 373,497 - +0.4 373,497 - -1.5 373,497 - -1.0 373,497 - +1.2 373,497 - +0.2 373,497 - -0.4 373,497 - -0.4 373,497 - +0.7 373,502 + -0.5 373,502 + +0.5 373,502 + -0.2 373,502 + -0.9 373,502 + -0.1 373,502 + +0.6 373,502 + -1.2 373,502 + -0.4 373,502 + -1.4 373,502 + +1.2 373,502 + +0.2 373,677 + -0.3 373,677 + +0.9 373,677 + -0.3 374,025 + Psest_0350 0.27 +0.5 374,025 + Psest_0350 0.27 +1.6 374,025 + Psest_0350 0.27 +0.6 374,025 + Psest_0350 0.27 -1.6 374,025 + Psest_0350 0.27 -1.4 374,025 + Psest_0350 0.27 +0.8 374,026 - Psest_0350 0.27 +2.2 374,026 - Psest_0350 0.27 +0.7 374,026 - Psest_0350 0.27 -1.5 374,026 - Psest_0350 0.27 +0.2 374,026 - Psest_0350 0.27 -0.2 374,026 - Psest_0350 0.27 +0.4 374,026 - Psest_0350 0.27 +2.2 374,026 - Psest_0350 0.27 +0.1 374,274 + Psest_0350 0.40 +0.0 374,275 - Psest_0350 0.40 +0.6
Or see this region's nucleotide sequence