Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0347

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
369,516	-				-0.2
369,525	+				+0.6
369,528	-				+0.4
369,528	-				-0.6
369,528	-				+0.7
369,528	-				-0.1
369,536	+				+0.6
369,553	-				+0.8
369,564	+				+0.6
369,566	+				-1.8
369,585	+				-1.3
369,639	-				-0.7
369,658	+				-0.7
369,659	-				-0.8
369,669	+				-0.2
369,670	-				-0.2
369,837	+				-0.1
369,837	+				-0.7
369,838	-				-0.5
369,909	-				-0.2
369,939	-				-0.4
369,939	-				+0.2
370,034	+		Psest_0346	0.27	-3.1
370,058	-		Psest_0346	0.36	-1.1
370,118	+		Psest_0346	0.58	-0.5
370,118	+		Psest_0346	0.58	-1.4
370,118	+		Psest_0346	0.58	-1.8
370,119	-		Psest_0346	0.59	-2.1
370,225	+				+0.3
370,225	+				+0.0
370,225	+				+1.2
370,226	-				-1.0
370,282	+				-0.4
370,282	+				-1.0
370,282	+				-2.1
370,282	+				-0.8
370,282	+				-1.2
370,282	+				+0.7
370,282	+				-0.5
370,282	+				-1.1
370,282	+				-1.0
370,283	-				-1.3
370,283	-				-1.9
370,283	-				+0.2
370,283	-				-1.5
370,283	-				-1.1
370,330	+				-0.1
370,330	+				-0.5
370,331	-				+0.2
370,456	+		Psest_0347	0.13	-1.0
370,480	+		Psest_0347	0.14	-0.9
370,480	+		Psest_0347	0.14	-2.1
370,481	-		Psest_0347	0.14	+0.2
370,481	-		Psest_0347	0.14	+0.5
370,481	-		Psest_0347	0.14	+0.3
370,510	+		Psest_0347	0.16	-1.8
370,564	+		Psest_0347	0.19	-2.3
370,617	+		Psest_0347	0.22	-0.3
370,621	+		Psest_0347	0.22	-0.3
370,621	+		Psest_0347	0.22	-0.7
370,621	+		Psest_0347	0.22	-2.1
370,621	+		Psest_0347	0.22	+1.8
370,621	+		Psest_0347	0.22	-0.3
370,622	-		Psest_0347	0.22	-0.9
370,622	-		Psest_0347	0.22	-1.1
370,622	-		Psest_0347	0.22	+0.2
370,622	-		Psest_0347	0.22	-0.7
370,625	+		Psest_0347	0.22	-0.4
370,626	-		Psest_0347	0.22	-0.9
370,626	-		Psest_0347	0.22	-0.7
370,723	+		Psest_0347	0.28	-0.6
370,730	+		Psest_0347	0.28	-0.7
370,731	-		Psest_0347	0.28	-1.5
370,756	+		Psest_0347	0.30	-2.0
370,756	+		Psest_0347	0.30	-0.6
370,757	-		Psest_0347	0.30	-0.8
370,757	-		Psest_0347	0.30	-0.4
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-1.9
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-2.6
370,774	+		Psest_0347	0.31	-0.1
370,775	-		Psest_0347	0.31	+0.3
370,775	-		Psest_0347	0.31	-1.0
370,775	-		Psest_0347	0.31	-1.4
370,775	-		Psest_0347	0.31	-1.4
370,775	-		Psest_0347	0.31	-2.6
370,775	-		Psest_0347	0.31	-0.7
370,795	+		Psest_0347	0.32	-0.8
370,795	+		Psest_0347	0.32	-0.7
370,796	-		Psest_0347	0.32	-0.4
370,796	-		Psest_0347	0.32	-0.2
370,940	-		Psest_0347	0.40	-0.8
371,021	+		Psest_0347	0.45	-0.3
371,021	+		Psest_0347	0.45	-2.3
371,021	+		Psest_0347	0.45	-0.8
371,021	+		Psest_0347	0.45	-1.6
371,021	+		Psest_0347	0.45	-1.2
371,021	+		Psest_0347	0.45	+0.8
371,021	+		Psest_0347	0.45	-0.6
371,022	-		Psest_0347	0.45	-1.9
371,022	-		Psest_0347	0.45	-0.5
371,022	-		Psest_0347	0.45	-1.3
371,022	-		Psest_0347	0.45	-1.5
371,022	-		Psest_0347	0.45	-0.5
371,022	-		Psest_0347	0.45	-0.5
371,104	+		Psest_0347	0.49	+0.2
371,162	-		Psest_0347	0.53	+0.2
371,162	-		Psest_0347	0.53	-1.0
371,232	+		Psest_0347	0.57	-1.4
371,232	+		Psest_0347	0.57	-1.9
371,233	-		Psest_0347	0.57	-0.4
371,233	-		Psest_0347	0.57	-0.7
371,233	-		Psest_0347	0.57	-0.7
371,233	-		Psest_0347	0.57	-1.9
371,284	+		Psest_0347	0.59	-0.8
371,284	+		Psest_0347	0.59	-0.9
371,284	+		Psest_0347	0.59	-1.8
371,284	+		Psest_0347	0.59	-1.8
371,284	+		Psest_0347	0.59	-2.5
371,284	+		Psest_0347	0.59	+0.2
371,284	+		Psest_0347	0.59	-0.5
371,285	-		Psest_0347	0.60	-0.8
371,285	-		Psest_0347	0.60	+1.2
371,285	-		Psest_0347	0.60	-0.7
371,285	-		Psest_0347	0.60	+0.0
371,285	-		Psest_0347	0.60	-1.8
371,285	-		Psest_0347	0.60	-1.1
371,285	-		Psest_0347	0.60	-1.3
371,285	-		Psest_0347	0.60	-1.1
371,633	+		Psest_0347	0.79	-0.8
371,634	-		Psest_0347	0.79	-1.3
371,691	+		Psest_0347	0.82	+0.6
371,691	+		Psest_0347	0.82	-1.4
371,691	+		Psest_0347	0.82	+0.0
371,764	+		Psest_0347	0.87	+0.8
371,764	+		Psest_0347	0.87	-1.0
371,764	+		Psest_0347	0.87	+0.2
371,764	+		Psest_0347	0.87	-0.5
371,764	+		Psest_0347	0.87	-1.1
371,764	+		Psest_0347	0.87	+0.2
371,764	+		Psest_0347	0.87	-1.7
371,764	+		Psest_0347	0.87	-1.8
371,764	+		Psest_0347	0.87	-0.6
371,764	+		Psest_0347	0.87	-0.8
371,764	+		Psest_0347	0.87	-0.3
371,765	-		Psest_0347	0.87	-0.6
371,765	-		Psest_0347	0.87	-1.3
371,765	-		Psest_0347	0.87	-1.1
371,765	-		Psest_0347	0.87	-1.7
371,776	+		Psest_0347	0.87	-0.2
371,899	+				-2.0
371,998	+				+0.1
372,005	+				+0.4
372,005	+				+0.5
372,005	+				+0.6
372,048	+				+0.4
372,048	+				+0.1
372,048	+				-0.2
372,048	+				-0.3
372,048	+				-0.2
372,048	+				+0.4
372,048	+				+0.5
372,049	-				+0.9
372,049	-				-1.5
372,095	+				-1.0
372,095	+				-0.9
372,095	+				-0.2
372,095	+				+1.9
372,095	+				-1.7
372,095	+				-0.6
372,095	+				+0.2
372,095	+				-0.6
372,095	+				+2.8
372,095	+				-0.7
372,095	+				-1.1
372,095	+				-0.1
372,095	+				-2.5
372,095	+				-1.0
372,095	+				+0.2
372,095	+				-0.8
372,095	+				-0.2
372,095	+				-0.1
372,095	+				-3.3
372,095	+				+0.1
372,095	+				-0.4
372,095	+				+1.2
372,095	+				+0.1
372,095	+				+0.2
372,095	+				+0.6
372,095	+				-0.7
372,095	+				-0.6
372,095	+				-0.6
372,095	+				-1.0
372,095	+				+0.6
372,095	+				+0.0
372,095	+				-0.4
372,095	+				+0.6
372,096	-				-0.2
372,096	-				+0.2
372,096	-				+0.3
372,096	-				+0.8
372,096	-				-0.3
372,096	-				-0.9
372,096	-				+0.2
372,096	-				+0.0
372,096	-				+0.4
372,096	-				+0.5
372,096	-				-0.2
372,096	-				+0.2
372,096	-				+1.9
372,096	-				-0.1
372,096	-				-1.4
372,096	-				-0.2
372,096	-				-0.5
372,096	-				-0.0
372,096	-				+0.2
372,096	-				-1.0
372,097	+				+0.7
372,097	+				-0.2
372,097	+				+0.2
372,097	+				-0.2
372,097	+				-0.1
372,097	+				+0.1
372,097	+				+0.1
372,097	+				+0.5
372,097	+				+0.3
372,097	+				+0.2
372,097	+				+0.5
372,097	+				+2.4
372,097	+				+0.7
372,097	+				+0.3
372,097	+				+0.3
372,097	+				-0.6
372,097	+				-2.3
372,097	+				-1.5
372,097	+				+0.6
372,097	+				-0.7
372,097	+				+0.7
372,097	+				-1.1
372,098	-				+0.0
372,098	-				-1.4
372,098	-				-0.5
372,098	-				-1.0
372,098	-				+1.2
372,098	-				-0.0
372,098	-				-0.0
372,098	-				-0.7
372,098	-				-1.0
372,098	-				-0.8
372,098	-				-4.3
372,098	-				-0.4
372,098	-				+0.0
372,098	-				+0.1
372,098	-				-1.4
372,111	+				+0.1
372,111	+				-0.2
372,111	+				-0.0
372,112	-				+0.2
372,112	-				+0.2
372,112	-				+1.2
372,112	-				-0.6
372,179	-		Psest_0348	0.16	-0.1
372,233	+		Psest_0348	0.26	-0.1
372,233	+		Psest_0348	0.26	-1.0
372,234	-		Psest_0348	0.26	+0.0
372,234	-		Psest_0348	0.26	-0.4
372,234	-		Psest_0348	0.26	-0.4
372,246	-		Psest_0348	0.29	+1.2
372,368	+		Psest_0348	0.52	-1.2
372,368	+		Psest_0348	0.52	+2.2
372,368	+		Psest_0348	0.52	+0.2
372,370	+		Psest_0348	0.52	-0.1
372,370	+		Psest_0348	0.52	-0.1
372,370	+		Psest_0348	0.52	-0.6
372,371	-		Psest_0348	0.53	+0.1
372,371	-		Psest_0348	0.53	-1.1
372,587	+				-2.7
372,587	+				+0.2
372,588	-				-0.2
372,595	+				-0.1
372,596	-				-0.1
372,596	-				-0.6
372,596	-				-1.4
372,618	+				+0.8
372,618	+				-0.9
372,618	+				-0.6
372,618	+				-0.4
372,618	+				-1.6
372,618	+				-0.4
372,618	+				+0.6
372,760	-				+0.4
372,760	-				-0.6
372,760	-				+0.6
372,959	+		Psest_0349	0.23	-1.5
372,973	+		Psest_0349	0.25	+0.2
372,973	+		Psest_0349	0.25	-1.1
372,973	+		Psest_0349	0.25	-2.0
372,974	-		Psest_0349	0.25	+0.2