Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0346

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
368,973	+		Psest_0345	0.47	+1.6
368,973	+		Psest_0345	0.47	-0.4
368,973	+		Psest_0345	0.47	+0.2
368,973	+		Psest_0345	0.47	-0.3
368,973	+		Psest_0345	0.47	+1.0
368,973	+		Psest_0345	0.47	+2.2
368,973	+		Psest_0345	0.47	-0.2
368,973	+		Psest_0345	0.47	-0.4
368,973	+		Psest_0345	0.47	-0.3
368,973	+		Psest_0345	0.47	-0.6
368,973	+		Psest_0345	0.47	-0.3
368,973	+		Psest_0345	0.47	-0.1
368,973	+		Psest_0345	0.47	+1.2
368,973	+		Psest_0345	0.47	+0.0
368,973	+		Psest_0345	0.47	-0.9
368,973	+		Psest_0345	0.47	+1.8
368,973	+		Psest_0345	0.47	-0.4
368,974	-		Psest_0345	0.47	-0.2
368,974	-		Psest_0345	0.47	-0.4
368,974	-		Psest_0345	0.47	-1.2
368,974	-		Psest_0345	0.47	+1.5
368,974	-		Psest_0345	0.47	+0.2
368,974	-		Psest_0345	0.47	-0.0
368,974	-		Psest_0345	0.47	+0.1
368,974	-		Psest_0345	0.47	-1.0
368,974	-		Psest_0345	0.47	+0.1
368,974	-		Psest_0345	0.47	-2.2
368,974	-		Psest_0345	0.47	+0.2
368,974	-		Psest_0345	0.47	-0.5
368,974	-		Psest_0345	0.47	-0.7
368,974	-		Psest_0345	0.47	+0.4
368,974	-		Psest_0345	0.47	-0.1
368,974	-		Psest_0345	0.47	-0.4
368,974	-		Psest_0345	0.47	-0.7
368,974	-		Psest_0345	0.47	-0.6
368,974	-		Psest_0345	0.47	-0.1
368,974	-		Psest_0345	0.47	+0.2
368,975	+		Psest_0345	0.47	-0.6
368,975	+		Psest_0345	0.47	+0.6
368,975	+		Psest_0345	0.47	+0.5
368,975	+		Psest_0345	0.47	+0.0
368,975	+		Psest_0345	0.47	+0.1
368,976	-		Psest_0345	0.47	+0.4
368,976	-		Psest_0345	0.47	+0.2
368,976	-		Psest_0345	0.47	-0.4
368,976	-		Psest_0345	0.47	-1.1
368,976	-		Psest_0345	0.47	-0.4
368,976	-		Psest_0345	0.47	+0.6
368,976	-		Psest_0345	0.47	-0.4
368,976	-		Psest_0345	0.47	-1.8
368,976	-		Psest_0345	0.47	-0.6
368,976	-		Psest_0345	0.47	+2.2
368,976	-		Psest_0345	0.47	+0.0
369,152	+		Psest_0345	0.82	-0.1
369,153	-		Psest_0345	0.82	-0.6
369,203	+				-1.9
369,203	+				-0.2
369,203	+				-0.4
369,203	+				+0.2
369,204	-				+0.5
369,204	-				+0.2
369,204	-				+1.1
369,218	+				-0.6
369,219	-				-1.2
369,219	-				-0.8
369,516	-				-0.2
369,525	+				+0.6
369,528	-				+0.4
369,528	-				-0.6
369,528	-				+0.7
369,528	-				-0.1
369,536	+				+0.6
369,553	-				+0.8
369,564	+				+0.6
369,566	+				-1.8
369,585	+				-1.3
369,639	-				-0.7
369,658	+				-0.7
369,659	-				-0.8
369,669	+				-0.2
369,670	-				-0.2
369,837	+				-0.1
369,837	+				-0.7
369,838	-				-0.5
369,909	-				-0.2
369,939	-				-0.4
369,939	-				+0.2
370,034	+		Psest_0346	0.27	-3.1
370,058	-		Psest_0346	0.36	-1.1
370,118	+		Psest_0346	0.58	-0.5
370,118	+		Psest_0346	0.58	-1.4
370,118	+		Psest_0346	0.58	-1.8
370,119	-		Psest_0346	0.59	-2.1
370,225	+				+0.3
370,225	+				+0.0
370,225	+				+1.2
370,226	-				-1.0
370,282	+				-0.4
370,282	+				-1.0
370,282	+				-2.1
370,282	+				-0.8
370,282	+				-1.2
370,282	+				+0.7
370,282	+				-0.5
370,282	+				-1.1
370,282	+				-1.0
370,283	-				-1.3
370,283	-				-1.9
370,283	-				+0.2
370,283	-				-1.5
370,283	-				-1.1
370,330	+				-0.1
370,330	+				-0.5
370,331	-				+0.2
370,456	+		Psest_0347	0.13	-1.0
370,480	+		Psest_0347	0.14	-0.9
370,480	+		Psest_0347	0.14	-2.1
370,481	-		Psest_0347	0.14	+0.2
370,481	-		Psest_0347	0.14	+0.5
370,481	-		Psest_0347	0.14	+0.3
370,510	+		Psest_0347	0.16	-1.8
370,564	+		Psest_0347	0.19	-2.3
370,617	+		Psest_0347	0.22	-0.3
370,621	+		Psest_0347	0.22	-0.3
370,621	+		Psest_0347	0.22	-0.7
370,621	+		Psest_0347	0.22	-2.1
370,621	+		Psest_0347	0.22	+1.8
370,621	+		Psest_0347	0.22	-0.3
370,622	-		Psest_0347	0.22	-0.9
370,622	-		Psest_0347	0.22	-1.1
370,622	-		Psest_0347	0.22	+0.2
370,622	-		Psest_0347	0.22	-0.7
370,625	+		Psest_0347	0.22	-0.4
370,626	-		Psest_0347	0.22	-0.9
370,626	-		Psest_0347	0.22	-0.7
370,723	+		Psest_0347	0.28	-0.6
370,730	+		Psest_0347	0.28	-0.7
370,731	-		Psest_0347	0.28	-1.5
370,756	+		Psest_0347	0.30	-2.0
370,756	+		Psest_0347	0.30	-0.6
370,757	-		Psest_0347	0.30	-0.8
370,757	-		Psest_0347	0.30	-0.4
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-1.9
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-0.5
370,774	+		Psest_0347	0.31	-2.6
370,774	+		Psest_0347	0.31	-0.1
370,775	-		Psest_0347	0.31	+0.3
370,775	-		Psest_0347	0.31	-1.0
370,775	-		Psest_0347	0.31	-1.4
370,775	-		Psest_0347	0.31	-1.4
370,775	-		Psest_0347	0.31	-2.6
370,775	-		Psest_0347	0.31	-0.7
370,795	+		Psest_0347	0.32	-0.8
370,795	+		Psest_0347	0.32	-0.7
370,796	-		Psest_0347	0.32	-0.4
370,796	-		Psest_0347	0.32	-0.2
370,940	-		Psest_0347	0.40	-0.8
371,021	+		Psest_0347	0.45	-0.3
371,021	+		Psest_0347	0.45	-2.3
371,021	+		Psest_0347	0.45	-0.8
371,021	+		Psest_0347	0.45	-1.6
371,021	+		Psest_0347	0.45	-1.2
371,021	+		Psest_0347	0.45	+0.8
371,021	+		Psest_0347	0.45	-0.6
371,022	-		Psest_0347	0.45	-1.9
371,022	-		Psest_0347	0.45	-0.5
371,022	-		Psest_0347	0.45	-1.3
371,022	-		Psest_0347	0.45	-1.5
371,022	-		Psest_0347	0.45	-0.5
371,022	-		Psest_0347	0.45	-0.5
371,104	+		Psest_0347	0.49	+0.2
371,162	-		Psest_0347	0.53	+0.2
371,162	-		Psest_0347	0.53	-1.0