Experiment: Def 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0320 and Psest_0321 are separated by 12 nucleotides Psest_0321 and Psest_0322 are separated by 55 nucleotides Psest_0322 and Psest_0323 are separated by 222 nucleotides
Psest_0320: Psest_0320 - ABC-type multidrug transport system, ATPase component, at 343,620 to 344,543
_0320
Psest_0321: Psest_0321 - Predicted membrane protein, at 344,556 to 345,317
_0321
Psest_0322: Psest_0322 - hypothetical protein, at 345,373 to 345,708
_0322
Psest_0323: Psest_0323 - S-adenosylmethionine synthetase, at 345,931 to 347,121
_0323
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.579 kb on + strand at 343.580 kb on - strand at 343.583 kb on + strand at 343.659 kb on + strand at 343.659 kb on + strand at 343.660 kb on - strand at 343.660 kb on - strand at 344.196 kb on + strand, within Psest_0320 at 344.196 kb on + strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.565 kb on + strand at 344.583 kb on + strand at 344.583 kb on + strand at 344.583 kb on + strand at 344.584 kb on - strand at 344.584 kb on - strand at 344.584 kb on - strand at 344.584 kb on - strand at 344.658 kb on + strand, within Psest_0321 at 344.658 kb on + strand, within Psest_0321 at 344.659 kb on - strand, within Psest_0321 at 344.659 kb on - strand, within Psest_0321 at 344.659 kb on - strand, within Psest_0321 at 344.668 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.796 kb on + strand, within Psest_0321 at 344.797 kb on + strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.797 kb on - strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.823 kb on + strand, within Psest_0321 at 344.824 kb on - strand, within Psest_0321 at 344.824 kb on - strand, within Psest_0321 at 344.850 kb on + strand, within Psest_0321 at 344.850 kb on + strand, within Psest_0321 at 344.851 kb on - strand, within Psest_0321 at 344.851 kb on - strand, within Psest_0321 at 344.851 kb on - strand, within Psest_0321 at 344.851 kb on - strand, within Psest_0321 at 344.946 kb on + strand, within Psest_0321 at 344.946 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.171 kb on + strand, within Psest_0321 at 345.171 kb on + strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.202 kb on - strand, within Psest_0321 at 345.202 kb on - strand, within Psest_0321 at 345.358 kb on + strand at 345.358 kb on + strand at 345.359 kb on - strand at 345.359 kb on - strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.375 kb on - strand at 345.375 kb on - strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.723 kb on + strand at 345.723 kb on + strand at 345.723 kb on + strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM remove 343,579 + +0.2 343,580 - +0.2 343,583 + -0.4 343,659 + +0.6 343,659 + -0.9 343,660 - +0.6 343,660 - -0.7 344,196 + Psest_0320 0.62 -0.7 344,196 + Psest_0320 0.62 -2.8 344,197 - Psest_0320 0.62 -0.9 344,197 - Psest_0320 0.62 -1.2 344,197 - Psest_0320 0.62 -0.1 344,197 - Psest_0320 0.62 -0.2 344,197 - Psest_0320 0.62 -0.9 344,197 - Psest_0320 0.62 +0.6 344,197 - Psest_0320 0.62 -0.4 344,565 + +2.2 344,583 + -0.9 344,583 + -0.5 344,583 + -0.7 344,584 - -0.6 344,584 - +0.1 344,584 - -1.5 344,584 - -2.0 344,658 + Psest_0321 0.13 +0.2 344,658 + Psest_0321 0.13 -2.3 344,659 - Psest_0321 0.14 +0.3 344,659 - Psest_0321 0.14 +0.2 344,659 - Psest_0321 0.14 -0.4 344,668 + Psest_0321 0.15 +0.5 344,796 + Psest_0321 0.31 +0.5 344,796 + Psest_0321 0.31 -1.5 344,796 + Psest_0321 0.31 +1.2 344,796 + Psest_0321 0.31 -2.0 344,796 + Psest_0321 0.31 -2.7 344,796 + Psest_0321 0.31 +0.5 344,796 + Psest_0321 0.31 -0.3 344,796 + Psest_0321 0.31 -0.3 344,796 + Psest_0321 0.31 -0.7 344,796 + Psest_0321 0.31 -0.1 344,796 + Psest_0321 0.31 +0.2 344,796 + Psest_0321 0.31 +0.3 344,796 + Psest_0321 0.31 -1.3 344,796 + Psest_0321 0.31 +0.2 344,796 + Psest_0321 0.31 -1.0 344,796 + Psest_0321 0.31 +0.8 344,796 + Psest_0321 0.31 -1.1 344,796 + Psest_0321 0.31 -0.3 344,796 + Psest_0321 0.31 -1.0 344,797 + Psest_0321 0.32 -1.1 344,797 - Psest_0321 0.32 +0.5 344,797 - Psest_0321 0.32 +0.2 344,797 - Psest_0321 0.32 -1.1 344,797 - Psest_0321 0.32 -0.4 344,797 - Psest_0321 0.32 +1.0 344,797 - Psest_0321 0.32 -1.4 344,797 - Psest_0321 0.32 -1.4 344,797 - Psest_0321 0.32 -0.8 344,797 - Psest_0321 0.32 -2.0 344,797 - Psest_0321 0.32 +0.8 344,797 - Psest_0321 0.32 -0.6 344,797 - Psest_0321 0.32 -2.3 344,797 - Psest_0321 0.32 +1.2 344,797 - Psest_0321 0.32 -1.4 344,797 - Psest_0321 0.32 -1.1 344,823 + Psest_0321 0.35 -0.1 344,823 + Psest_0321 0.35 -1.1 344,823 + Psest_0321 0.35 +1.0 344,823 + Psest_0321 0.35 +0.1 344,823 + Psest_0321 0.35 -1.1 344,823 + Psest_0321 0.35 +0.2 344,824 - Psest_0321 0.35 -0.2 344,824 - Psest_0321 0.35 -1.0 344,850 + Psest_0321 0.39 -2.3 344,850 + Psest_0321 0.39 -1.4 344,851 - Psest_0321 0.39 -0.3 344,851 - Psest_0321 0.39 -0.1 344,851 - Psest_0321 0.39 -0.8 344,851 - Psest_0321 0.39 -0.9 344,946 + Psest_0321 0.51 -0.1 344,946 + Psest_0321 0.51 +0.3 345,111 + Psest_0321 0.73 -0.8 345,111 + Psest_0321 0.73 -0.2 345,111 + Psest_0321 0.73 +0.2 345,111 + Psest_0321 0.73 +1.0 345,111 + Psest_0321 0.73 +0.1 345,112 - Psest_0321 0.73 -1.1 345,112 - Psest_0321 0.73 -0.9 345,112 - Psest_0321 0.73 -1.0 345,171 + Psest_0321 0.81 -1.4 345,171 + Psest_0321 0.81 +0.0 345,172 - Psest_0321 0.81 -2.5 345,172 - Psest_0321 0.81 +1.6 345,172 - Psest_0321 0.81 -0.3 345,172 - Psest_0321 0.81 -1.4 345,172 - Psest_0321 0.81 -0.6 345,201 + Psest_0321 0.85 +1.2 345,201 + Psest_0321 0.85 -0.7 345,201 + Psest_0321 0.85 -1.5 345,201 + Psest_0321 0.85 +0.3 345,201 + Psest_0321 0.85 -0.7 345,202 - Psest_0321 0.85 -0.1 345,202 - Psest_0321 0.85 -0.5 345,358 + +0.7 345,358 + +0.2 345,359 - +0.4 345,359 - -2.7 345,374 + +0.9 345,374 + -0.2 345,374 + -0.3 345,374 + +0.2 345,374 + -0.5 345,374 + -0.5 345,374 + +1.2 345,375 - +0.2 345,375 - +0.5 345,702 + -1.0 345,702 + +0.2 345,702 + -0.1 345,702 + +0.6 345,702 + -0.8 345,702 + -0.4 345,703 - +0.6 345,703 - +1.2 345,703 - +0.2 345,703 - -0.7 345,703 - +0.8 345,703 - -0.7 345,723 + +0.7 345,723 + -0.8 345,723 + -0.4 345,724 - +0.9 345,724 - -0.7 345,724 - -0.8 345,724 - -0.7 345,724 - +0.1 345,724 - -1.1 345,724 - -0.8 345,778 - +1.1 345,778 - -1.0 345,778 - +1.2 345,778 - -1.1 345,778 - -0.4 345,832 - -0.2
Or see this region's nucleotide sequence