Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0296

Experiment: Def 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0295 and Psest_0296 are separated by 87 nucleotidesPsest_0296 and Psest_0297 are separated by 236 nucleotidesPsest_0297 and Psest_0298 are separated by 43 nucleotides Psest_0295: Psest_0295 - TonB family C-terminal domain, at 309,161 to 310,054 _0295 Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092 _0296 Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736 _0297 Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145 _0298 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1at 310.257 kb on + strand, within Psest_0296at 310.257 kb on + strand, within Psest_0296at 310.258 kb on - strand, within Psest_0296at 310.258 kb on - strand, within Psest_0296at 310.258 kb on - strand, within Psest_0296at 310.258 kb on - strand, within Psest_0296at 310.268 kb on + strand, within Psest_0296at 310.491 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.800 kb on + strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.960 kb on - strand, within Psest_0296at 310.978 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 311.206 kb on + strandat 311.229 kb on + strandat 311.229 kb on + strandat 311.230 kb on - strandat 311.288 kb on + strandat 311.289 kb on - strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.300 kb on - strandat 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.418 kb on - strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.768 kb on + strandat 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.926 kb on - strand, within Psest_0298at 312.080 kb on + strand, within Psest_0298at 312.081 kb on - strand, within Psest_0298

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM
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310,257 + Psest_0296 0.12 -2.1
310,257 + Psest_0296 0.12 -0.8
310,258 - Psest_0296 0.12 -0.8
310,258 - Psest_0296 0.12 -0.4
310,258 - Psest_0296 0.12 -1.0
310,258 - Psest_0296 0.12 -0.6
310,268 + Psest_0296 0.13 -0.3
310,491 + Psest_0296 0.37 -0.4
310,791 + Psest_0296 0.68 -2.0
310,791 + Psest_0296 0.68 +0.5
310,791 + Psest_0296 0.68 -0.8
310,791 + Psest_0296 0.68 +0.2
310,800 + Psest_0296 0.69 -1.3
310,801 - Psest_0296 0.69 -0.1
310,801 - Psest_0296 0.69 +0.2
310,801 - Psest_0296 0.69 +0.2
310,801 - Psest_0296 0.69 -0.4
310,806 + Psest_0296 0.70 +0.6
310,806 + Psest_0296 0.70 -1.9
310,806 + Psest_0296 0.70 -2.1
310,806 + Psest_0296 0.70 -0.4
310,806 + Psest_0296 0.70 -1.7
310,806 + Psest_0296 0.70 -0.2
310,807 - Psest_0296 0.70 +0.3
310,807 - Psest_0296 0.70 -2.0
310,807 - Psest_0296 0.70 -1.4
310,960 - Psest_0296 0.86 +0.2
310,978 + Psest_0296 0.88 -0.8
310,980 + Psest_0296 0.88 -1.7
310,980 + Psest_0296 0.88 -1.6
310,980 + Psest_0296 0.88 -3.0
310,980 + Psest_0296 0.88 -1.0
310,980 + Psest_0296 0.88 -1.4
310,980 + Psest_0296 0.88 -1.4
310,980 + Psest_0296 0.88 +0.7
310,981 - Psest_0296 0.88 +0.2
310,981 - Psest_0296 0.88 -0.3
310,981 - Psest_0296 0.88 -0.4
310,981 - Psest_0296 0.88 -2.3
310,981 - Psest_0296 0.88 -1.2
310,981 - Psest_0296 0.88 -3.3
310,981 - Psest_0296 0.88 -1.2
310,981 - Psest_0296 0.88 +0.5
310,981 - Psest_0296 0.88 +0.2
310,981 - Psest_0296 0.88 -0.5
310,981 - Psest_0296 0.88 +1.2
311,206 + -1.6
311,229 + +0.5
311,229 + -1.1
311,230 - -0.9
311,288 + -1.3
311,289 - -0.4
311,299 + +0.2
311,299 + -0.0
311,299 + -0.0
311,299 + +0.3
311,300 - +0.2
311,417 + Psest_0297 0.22 -0.1
311,417 + Psest_0297 0.22 -0.1
311,417 + Psest_0297 0.22 +0.8
311,417 + Psest_0297 0.22 -1.4
311,417 + Psest_0297 0.22 +0.2
311,418 - Psest_0297 0.22 -1.1
311,505 + Psest_0297 0.43 -1.3
311,505 + Psest_0297 0.43 -2.6
311,505 + Psest_0297 0.43 -0.4
311,505 + Psest_0297 0.43 -0.4
311,506 - Psest_0297 0.43 -0.7
311,506 - Psest_0297 0.43 -0.6
311,629 - Psest_0297 0.74 -0.9
311,629 - Psest_0297 0.74 -1.6
311,768 + -0.5
311,822 + Psest_0298 0.11 -0.3
311,822 + Psest_0298 0.11 +1.2
311,822 + Psest_0298 0.11 +0.0
311,822 + Psest_0298 0.11 +0.2
311,822 + Psest_0298 0.11 +0.1
311,822 + Psest_0298 0.11 -0.8
311,822 + Psest_0298 0.11 +0.1
311,822 + Psest_0298 0.11 -1.6
311,823 - Psest_0298 0.12 +1.2
311,823 - Psest_0298 0.12 -1.1
311,823 - Psest_0298 0.12 -0.5
311,823 - Psest_0298 0.12 -1.8
311,926 - Psest_0298 0.40 +0.6
312,080 + Psest_0298 0.82 -0.3
312,081 - Psest_0298 0.82 -1.1

Or see this region's nucleotide sequence