Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1642

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
1,745,673	+				-0.7
1,745,673	+				-0.1
1,745,673	+				+0.2
1,745,722	+				-0.1
1,745,722	+				-1.8
1,745,722	+				-1.0
1,745,723	-				+0.4
1,745,723	-				-1.3
1,745,723	-				-0.7
1,745,804	-		Psest_1641	0.10	-0.4
1,745,839	+		Psest_1641	0.14	+1.0
1,745,840	-		Psest_1641	0.15	-0.2
1,745,840	-		Psest_1641	0.15	+1.4
1,745,840	-		Psest_1641	0.15	-1.3
1,745,920	+		Psest_1641	0.24	+0.8
1,745,920	+		Psest_1641	0.24	+0.4
1,745,921	-		Psest_1641	0.24	+0.3
1,745,923	+		Psest_1641	0.25	-2.8
1,745,924	-		Psest_1641	0.25	+0.1
1,746,034	+		Psest_1641	0.38	-0.2
1,746,034	+		Psest_1641	0.38	+1.2
1,746,035	-		Psest_1641	0.38	-0.8
1,746,035	-		Psest_1641	0.38	-0.2
1,746,035	-		Psest_1641	0.38	-0.6
1,746,952	+		Psest_1642	0.53	-1.2
1,746,953	-		Psest_1642	0.54	-0.9
1,746,953	-		Psest_1642	0.54	-1.0
1,746,955	+		Psest_1642	0.54	+0.3
1,746,955	+		Psest_1642	0.54	-0.5
1,746,956	-		Psest_1642	0.54	+2.3
1,746,956	-		Psest_1642	0.54	-0.6
1,746,956	-		Psest_1642	0.54	-1.8
1,747,265	+				+0.4
1,747,336	-		Psest_1643	0.15	-2.2
1,747,336	-		Psest_1643	0.15	-1.1
1,747,577	+				+0.5
1,747,578	-				+0.0
1,747,691	+				+1.0
1,747,691	+				-0.4
1,747,691	+				+0.4
1,747,691	+				-0.8
1,747,691	+				+1.0
1,747,692	-				+0.3
1,747,881	+		Psest_1644	0.24	-1.0
1,747,882	-		Psest_1644	0.24	+0.4
1,747,882	-		Psest_1644	0.24	+0.7
1,747,882	-		Psest_1644	0.24	-1.3
1,748,150	+		Psest_1644	0.44	+0.3
1,748,151	-		Psest_1644	0.44	-0.7
1,748,166	-		Psest_1644	0.45	+0.1
1,748,166	-		Psest_1644	0.45	-2.5
1,748,182	+		Psest_1644	0.47	-0.4
1,748,183	-		Psest_1644	0.47	-0.1
1,748,183	-		Psest_1644	0.47	+0.5
1,748,183	-		Psest_1644	0.47	-0.1