Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0153

Experiment: Def 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0151 and Psest_0152 are separated by 129 nucleotidesPsest_0152 and Psest_0153 overlap by 1 nucleotidesPsest_0153 and Psest_0154 are separated by 0 nucleotidesPsest_0154 and Psest_0155 are separated by 36 nucleotides Psest_0151: Psest_0151 - Response regulator with putative antiterminator output domain, at 150,659 to 151,969 _0151 Psest_0152: Psest_0152 - Imidazoleglycerol-phosphate dehydratase, at 152,099 to 152,692 _0152 Psest_0153: Psest_0153 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 152,692 to 153,330 _0153 Psest_0154: Psest_0154 - Uncharacterized conserved protein, at 153,331 to 153,591 _0154 Psest_0155: Psest_0155 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 153,628 to 154,371 _0155 Position (kb) 152 153 154Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.810 kb on - strand, within Psest_0151at 151.862 kb on - strandat 152.058 kb on + strandat 152.058 kb on + strandat 152.059 kb on - strandat 152.059 kb on - strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.061 kb on - strandat 152.061 kb on - strandat 152.111 kb on - strandat 152.111 kb on - strandat 152.111 kb on - strandat 152.117 kb on + strandat 152.117 kb on + strandat 152.118 kb on - strandat 152.118 kb on - strandat 152.118 kb on - strandat 152.121 kb on + strandat 152.122 kb on - strandat 152.122 kb on - strandat 152.122 kb on - strandat 152.339 kb on - strand, within Psest_0152at 152.339 kb on - strand, within Psest_0152at 152.387 kb on + strand, within Psest_0152at 152.387 kb on + strand, within Psest_0152at 152.388 kb on - strand, within Psest_0152at 152.388 kb on - strand, within Psest_0152at 152.465 kb on + strand, within Psest_0152at 152.466 kb on - strand, within Psest_0152at 152.466 kb on - strand, within Psest_0152at 152.555 kb on - strand, within Psest_0152at 152.690 kb on + strandat 152.691 kb on - strandat 153.139 kb on + strand, within Psest_0153at 153.139 kb on + strand, within Psest_0153at 153.139 kb on + strand, within Psest_0153at 153.139 kb on + strand, within Psest_0153at 153.139 kb on + strand, within Psest_0153at 153.140 kb on - strand, within Psest_0153at 153.140 kb on - strand, within Psest_0153at 153.140 kb on - strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.154 kb on + strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.155 kb on - strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.157 kb on + strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.158 kb on - strand, within Psest_0153at 153.328 kb on + strandat 153.328 kb on + strandat 153.329 kb on - strandat 153.329 kb on - strandat 153.329 kb on - strandat 153.499 kb on + strand, within Psest_0154at 153.499 kb on + strand, within Psest_0154at 153.499 kb on + strand, within Psest_0154at 153.500 kb on - strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.502 kb on + strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.503 kb on - strand, within Psest_0154at 153.904 kb on + strand, within Psest_0155at 153.904 kb on + strand, within Psest_0155at 153.904 kb on + strand, within Psest_0155at 153.905 kb on - strand, within Psest_0155at 153.905 kb on - strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.925 kb on + strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 153.926 kb on - strand, within Psest_0155at 154.123 kb on + strand, within Psest_0155at 154.306 kb on + strandat 154.306 kb on + strandat 154.306 kb on + strandat 154.307 kb on - strandat 154.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 5-Hydroxymethylfurfural 5 mM
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151,809 + Psest_0151 0.88 +0.6
151,809 + Psest_0151 0.88 +0.1
151,809 + Psest_0151 0.88 -1.0
151,809 + Psest_0151 0.88 -0.5
151,809 + Psest_0151 0.88 +0.6
151,809 + Psest_0151 0.88 +0.1
151,810 - Psest_0151 0.88 +0.2
151,862 - +0.5
152,058 + -0.1
152,058 + -0.9
152,059 - -0.3
152,059 - +0.2
152,060 + +3.2
152,060 + -0.7
152,060 + -0.3
152,060 + -0.0
152,060 + -0.9
152,061 - -2.2
152,061 - -3.5
152,111 - -1.8
152,111 - -0.4
152,111 - -3.7
152,117 + -1.6
152,117 + -2.2
152,118 - -3.6
152,118 - -4.1
152,118 - -2.7
152,121 + -2.2
152,122 - -1.4
152,122 - -4.5
152,122 - -2.1
152,339 - Psest_0152 0.40 -4.7
152,339 - Psest_0152 0.40 -2.1
152,387 + Psest_0152 0.48 -2.9
152,387 + Psest_0152 0.48 -1.4
152,388 - Psest_0152 0.49 -3.2
152,388 - Psest_0152 0.49 -3.4
152,465 + Psest_0152 0.62 -5.7
152,466 - Psest_0152 0.62 -4.5
152,466 - Psest_0152 0.62 -3.5
152,555 - Psest_0152 0.77 -2.0
152,690 + -2.9
152,691 - -2.5
153,139 + Psest_0153 0.70 -5.0
153,139 + Psest_0153 0.70 -2.9
153,139 + Psest_0153 0.70 -2.2
153,139 + Psest_0153 0.70 -3.0
153,139 + Psest_0153 0.70 -2.0
153,140 - Psest_0153 0.70 -2.6
153,140 - Psest_0153 0.70 -3.2
153,140 - Psest_0153 0.70 +1.2
153,154 + Psest_0153 0.72 -3.1
153,154 + Psest_0153 0.72 -3.7
153,154 + Psest_0153 0.72 -5.1
153,154 + Psest_0153 0.72 -0.4
153,154 + Psest_0153 0.72 -3.3
153,154 + Psest_0153 0.72 -3.0
153,155 - Psest_0153 0.72 -3.0
153,155 - Psest_0153 0.72 -3.0
153,155 - Psest_0153 0.72 -4.1
153,155 - Psest_0153 0.72 -2.9
153,155 - Psest_0153 0.72 -3.1
153,155 - Psest_0153 0.72 -4.7
153,155 - Psest_0153 0.72 -2.5
153,155 - Psest_0153 0.72 -5.7
153,155 - Psest_0153 0.72 -0.8
153,155 - Psest_0153 0.72 -4.5
153,155 - Psest_0153 0.72 -3.2
153,155 - Psest_0153 0.72 -2.6
153,157 + Psest_0153 0.73 -2.5
153,157 + Psest_0153 0.73 -4.3
153,157 + Psest_0153 0.73 -2.0
153,157 + Psest_0153 0.73 -3.0
153,157 + Psest_0153 0.73 -4.3
153,157 + Psest_0153 0.73 -4.2
153,157 + Psest_0153 0.73 -5.4
153,157 + Psest_0153 0.73 -2.0
153,158 - Psest_0153 0.73 -1.6
153,158 - Psest_0153 0.73 -2.2
153,158 - Psest_0153 0.73 -3.2
153,158 - Psest_0153 0.73 -1.8
153,158 - Psest_0153 0.73 -3.3
153,158 - Psest_0153 0.73 -2.5
153,158 - Psest_0153 0.73 -4.7
153,158 - Psest_0153 0.73 -1.2
153,328 + -1.0
153,328 + +0.3
153,329 - -3.2
153,329 - -1.4
153,329 - -1.0
153,499 + Psest_0154 0.64 -0.8
153,499 + Psest_0154 0.64 +0.2
153,499 + Psest_0154 0.64 -0.1
153,500 - Psest_0154 0.65 -2.1
153,502 + Psest_0154 0.66 +0.3
153,502 + Psest_0154 0.66 -0.1
153,502 + Psest_0154 0.66 -0.5
153,502 + Psest_0154 0.66 -0.3
153,502 + Psest_0154 0.66 +0.3
153,502 + Psest_0154 0.66 +0.6
153,502 + Psest_0154 0.66 +0.5
153,502 + Psest_0154 0.66 +0.9
153,502 + Psest_0154 0.66 +0.6
153,502 + Psest_0154 0.66 +0.7
153,503 - Psest_0154 0.66 -3.6
153,503 - Psest_0154 0.66 -2.7
153,503 - Psest_0154 0.66 -4.3
153,503 - Psest_0154 0.66 -1.5
153,503 - Psest_0154 0.66 -4.0
153,503 - Psest_0154 0.66 -1.6
153,904 + Psest_0155 0.37 -2.5
153,904 + Psest_0155 0.37 -3.4
153,904 + Psest_0155 0.37 -2.4
153,905 - Psest_0155 0.37 -0.4
153,905 - Psest_0155 0.37 -4.7
153,925 + Psest_0155 0.40 -2.0
153,925 + Psest_0155 0.40 -4.9
153,925 + Psest_0155 0.40 -3.6
153,925 + Psest_0155 0.40 -1.4
153,925 + Psest_0155 0.40 -2.8
153,925 + Psest_0155 0.40 -1.1
153,926 - Psest_0155 0.40 -5.7
153,926 - Psest_0155 0.40 -2.5
153,926 - Psest_0155 0.40 -2.7
154,123 + Psest_0155 0.67 -0.8
154,306 + -2.6
154,306 + -3.0
154,306 + -4.6
154,307 - -2.1
154,307 - -2.2

Or see this region's nucleotide sequence