Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0112

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
109,850	+		Psest_0111	0.51	-0.1
109,851	-		Psest_0111	0.51	-0.0
109,851	-		Psest_0111	0.51	+0.2
110,027	+		Psest_0111	0.65	-1.1
110,172	-		Psest_0111	0.77	-1.1
110,172	-		Psest_0111	0.77	+1.5
110,172	-		Psest_0111	0.77	+0.2
110,336	+		Psest_0111	0.90	+1.2
110,336	+		Psest_0111	0.90	-0.4
110,336	+		Psest_0111	0.90	+1.1
110,336	+		Psest_0111	0.90	+0.1
110,336	+		Psest_0111	0.90	+2.2
110,337	-		Psest_0111	0.90	+1.2
110,337	-		Psest_0111	0.90	+0.2
110,337	-		Psest_0111	0.90	+1.2
110,337	-		Psest_0111	0.90	-0.1
110,337	-		Psest_0111	0.90	-0.1
110,337	-		Psest_0111	0.90	-2.1
110,625	+				-0.2
110,625	+				-0.6
110,662	+				+0.3
110,662	+				-0.4
110,662	+				+0.5
110,662	+				+1.6
110,662	+				+0.7
110,663	-				+0.2
110,663	-				-0.8
110,688	-				-0.6
110,819	+				-0.8
110,819	+				-0.8
110,819	+				-0.8
110,819	+				+0.2
110,820	-				+0.9
110,820	-				+1.5
110,820	-				+0.6
110,820	-				+0.0
110,820	-				+0.2
110,820	-				+1.0
110,820	-				+0.2
110,949	-		Psest_0112	0.17	+1.7
111,296	+		Psest_0112	0.54	+1.4
111,297	-		Psest_0112	0.54	+1.2
111,297	-		Psest_0112	0.54	-1.1
111,297	-		Psest_0112	0.54	+0.4
111,297	-		Psest_0112	0.54	+0.6
111,401	+		Psest_0112	0.66	+1.6
111,402	-		Psest_0112	0.66	-0.4
111,402	-		Psest_0112	0.66	-0.9
111,402	-		Psest_0112	0.66	-0.4
111,512	+		Psest_0112	0.78	+0.2
111,512	+		Psest_0112	0.78	+0.2
111,512	+		Psest_0112	0.78	+0.5
111,512	+		Psest_0112	0.78	-0.5
111,512	+		Psest_0112	0.78	+2.8
111,512	+		Psest_0112	0.78	+1.2
111,744	+				-0.6
111,745	-				-0.8
111,806	-				+1.1
111,841	-		Psest_0113	0.11	-2.0
112,281	+		Psest_0113	0.79	-0.6
112,281	+		Psest_0113	0.79	+1.5
112,577	-		Psest_0114	0.29	+1.2