Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0110

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
107,180	-		Psest_0108	0.71	+0.2
107,309	+		Psest_0108	0.85	+0.7
107,373	+				+0.2
107,449	+				-1.2
107,514	+				-0.6
107,514	+				-0.4
107,514	+				+0.8
107,514	+				-1.4
107,515	-				+1.2
107,515	-				+0.2
107,515	-				+2.8
107,515	-				+0.4
107,515	-				-0.4
107,515	-				+1.2
107,720	+		Psest_0109	0.34	-0.1
107,720	+		Psest_0109	0.34	+2.0
107,720	+		Psest_0109	0.34	+0.2
107,720	+		Psest_0109	0.34	-0.8
107,786	+		Psest_0109	0.50	+2.2
107,786	+		Psest_0109	0.50	+0.6
107,786	+		Psest_0109	0.50	+0.2
107,786	+		Psest_0109	0.50	+0.3
107,786	+		Psest_0109	0.50	-0.4
107,786	+		Psest_0109	0.50	+0.9
107,786	+		Psest_0109	0.50	+1.0
107,786	+		Psest_0109	0.50	+0.0
107,786	+		Psest_0109	0.50	-0.1
107,786	+		Psest_0109	0.50	+0.7
107,786	+		Psest_0109	0.50	-1.1
107,787	-		Psest_0109	0.50	-1.4
107,787	-		Psest_0109	0.50	-0.2
107,787	-		Psest_0109	0.50	+0.8
107,787	-		Psest_0109	0.50	+0.6
107,787	-		Psest_0109	0.50	-0.8
107,787	-		Psest_0109	0.50	+0.4
107,787	-		Psest_0109	0.50	+1.2
107,787	-		Psest_0109	0.50	-0.6
107,828	+		Psest_0109	0.60	-0.6
108,007	+				-0.2
108,007	+				-0.4
108,007	+				+0.2
108,007	+				+0.2
108,007	+				+0.6
108,007	+				+0.6
108,007	+				+1.8
108,008	-				-2.0
108,008	-				+0.2
108,008	-				+1.2
108,008	-				-1.6
108,038	-				+1.1
108,089	-		Psest_0110	0.11	+0.6
108,089	-		Psest_0110	0.11	-0.5
108,166	+		Psest_0110	0.21	+0.2
108,166	+		Psest_0110	0.21	+1.8
108,166	+		Psest_0110	0.21	+0.6
108,166	+		Psest_0110	0.21	+1.0
108,166	+		Psest_0110	0.21	+1.8
108,166	+		Psest_0110	0.21	+1.4
108,166	+		Psest_0110	0.21	-0.4
108,166	+		Psest_0110	0.21	-0.4
108,166	+		Psest_0110	0.21	+0.2
108,166	+		Psest_0110	0.21	-0.1
108,166	+		Psest_0110	0.21	+0.2
108,166	+		Psest_0110	0.21	+1.6
108,166	+		Psest_0110	0.21	+0.5
108,166	+		Psest_0110	0.21	+0.8
108,166	+		Psest_0110	0.21	+1.2
108,166	+		Psest_0110	0.21	+0.8
108,167	-		Psest_0110	0.21	+0.6
108,167	-		Psest_0110	0.21	+1.2
108,167	-		Psest_0110	0.21	+2.8
108,167	-		Psest_0110	0.21	+1.2
108,167	-		Psest_0110	0.21	-1.8
108,167	-		Psest_0110	0.21	+0.2
108,167	-		Psest_0110	0.21	+0.2
108,167	-		Psest_0110	0.21	-0.8
108,167	-		Psest_0110	0.21	-0.3
108,167	-		Psest_0110	0.21	+0.9
108,167	-		Psest_0110	0.21	+2.2
108,167	-		Psest_0110	0.21	+1.2
108,167	-		Psest_0110	0.21	+2.2
108,167	-		Psest_0110	0.21	+1.5
108,167	-		Psest_0110	0.21	+0.6
108,167	-		Psest_0110	0.21	-0.4
108,167	-		Psest_0110	0.21	-0.8
108,167	-		Psest_0110	0.21	-0.4
108,167	-		Psest_0110	0.21	+1.8
108,398	-		Psest_0110	0.52	-0.8
108,445	+		Psest_0110	0.58	-0.1
108,445	+		Psest_0110	0.58	+1.2
108,445	+		Psest_0110	0.58	+0.5
108,445	+		Psest_0110	0.58	+0.9
108,445	+		Psest_0110	0.58	+0.5
108,445	+		Psest_0110	0.58	+1.0
108,445	+		Psest_0110	0.58	+1.2
108,445	+		Psest_0110	0.58	+1.6
108,445	+		Psest_0110	0.58	+0.9
108,446	-		Psest_0110	0.58	+0.4
108,446	-		Psest_0110	0.58	-0.4
108,446	-		Psest_0110	0.58	+0.5
108,446	-		Psest_0110	0.58	-1.1
108,446	-		Psest_0110	0.58	-2.0
108,446	-		Psest_0110	0.58	-3.0
108,568	+		Psest_0110	0.74	+1.1
108,568	+		Psest_0110	0.74	+0.4
108,568	+		Psest_0110	0.74	+2.0
108,568	+		Psest_0110	0.74	+2.2
108,569	-		Psest_0110	0.74	+1.1
108,569	-		Psest_0110	0.74	+1.2
108,569	-		Psest_0110	0.74	-0.6
108,700	+				+1.2
108,700	+				+2.2
108,701	-				+0.8
108,701	-				+0.0
108,701	-				+2.2
108,702	+				+0.6
108,703	-				+1.2
108,883	+				+1.2
108,910	-				+1.2
109,257	-				+0.4
109,623	-		Psest_0111	0.33	+1.8
109,748	+		Psest_0111	0.43	-0.4
109,748	+		Psest_0111	0.43	+0.4
109,748	+		Psest_0111	0.43	-1.1
109,748	+		Psest_0111	0.43	+0.8
109,748	+		Psest_0111	0.43	-0.1
109,748	+		Psest_0111	0.43	-1.0
109,748	+		Psest_0111	0.43	-0.0
109,748	+		Psest_0111	0.43	+0.6
109,748	+		Psest_0111	0.43	+0.2
109,748	+		Psest_0111	0.43	+1.2
109,749	-		Psest_0111	0.43	-0.1
109,749	-		Psest_0111	0.43	+0.2
109,749	-		Psest_0111	0.43	-0.4
109,749	-		Psest_0111	0.43	-0.4
109,749	-		Psest_0111	0.43	-0.4
109,749	-		Psest_0111	0.43	-0.8
109,751	+		Psest_0111	0.43	+0.1
109,751	+		Psest_0111	0.43	-1.0
109,752	-		Psest_0111	0.43	+2.2
109,752	-		Psest_0111	0.43	+0.5
109,761	-		Psest_0111	0.44	-0.2
109,761	-		Psest_0111	0.44	+0.6