Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1054

Experiment: Def 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def 5-Hydroxymethylfurfural 5 mM
1,141,722	+		Psest_1053	0.57	-1.1
1,141,723	-		Psest_1053	0.57	+0.7
1,141,957	-		Psest_1053	0.76	-1.5
1,141,957	-		Psest_1053	0.76	-0.3
1,142,240	+				+0.8
1,142,298	+				-0.1
1,142,299	-				-0.9
1,142,367	-				-1.2
1,142,397	-				+0.7
1,142,475	-				-0.1
1,142,482	+				-0.2
1,142,551	+				-0.1
1,142,551	+				-0.9
1,142,586	+				+0.1
1,142,587	-				-1.6
1,142,587	-				-0.1
1,142,589	+				-0.5
1,142,589	+				+0.1
1,142,590	-				-1.7
1,142,590	-				-1.9
1,142,637	+				-0.9
1,142,638	-				-1.1
1,142,721	+		Psest_1054	0.14	-0.7
1,142,721	+		Psest_1054	0.14	-0.6
1,142,721	+		Psest_1054	0.14	-0.5
1,142,721	+		Psest_1054	0.14	-2.5
1,142,721	+		Psest_1054	0.14	-0.3
1,142,721	+		Psest_1054	0.14	-0.1
1,142,721	+		Psest_1054	0.14	+0.4
1,142,722	-		Psest_1054	0.14	-0.4
1,142,722	-		Psest_1054	0.14	-0.5
1,142,722	-		Psest_1054	0.14	-1.1
1,142,722	-		Psest_1054	0.14	-2.2
1,142,722	-		Psest_1054	0.14	+0.5
1,142,722	-		Psest_1054	0.14	-2.3
1,142,956	-		Psest_1054	0.35	+1.4
1,143,245	-		Psest_1054	0.61	-0.9
1,143,322	-		Psest_1054	0.68	-3.0
1,143,433	-		Psest_1054	0.79	+0.1
1,143,433	-		Psest_1054	0.79	+0.1
1,143,433	-		Psest_1054	0.79	-0.7
1,143,433	-		Psest_1054	0.79	+0.2
1,143,433	-		Psest_1054	0.79	-0.7
1,143,433	-		Psest_1054	0.79	-2.6
1,143,433	-		Psest_1054	0.79	-1.1
1,143,433	-		Psest_1054	0.79	-1.5
1,143,481	-		Psest_1054	0.83	+0.3
1,143,649	-				-1.7
1,143,649	-				-3.6
1,143,677	+				+0.6
1,143,678	-				+0.1
1,143,712	+				-1.2
1,143,712	+				-0.5
1,143,712	+				-1.5
1,143,712	+				+0.8
1,143,712	+				-1.3
1,143,712	+				-0.0
1,143,712	+				+0.3
1,143,713	-				-0.9
1,143,713	-				+0.5
1,143,751	+				+0.3
1,143,751	+				+2.1
1,143,751	+				+1.1
1,143,751	+				-1.1
1,143,752	-				-1.8
1,143,752	-				-0.3
1,143,790	+				-1.5
1,143,881	+		Psest_1055	0.12	+0.1
1,143,882	-		Psest_1055	0.12	+1.7
1,143,882	-		Psest_1055	0.12	-0.4
1,143,976	+		Psest_1055	0.20	-0.3
1,143,976	+		Psest_1055	0.20	-0.1
1,143,977	-		Psest_1055	0.20	-1.3
1,143,977	-		Psest_1055	0.20	-0.8
1,143,977	-		Psest_1055	0.20	+0.7
1,143,977	-		Psest_1055	0.20	-0.5
1,144,074	-		Psest_1055	0.28	-2.1
1,144,082	+		Psest_1055	0.29	-1.7
1,144,082	-		Psest_1055	0.29	-1.2
1,144,083	-		Psest_1055	0.29	-0.7
1,144,083	-		Psest_1055	0.29	-0.9
1,144,194	-		Psest_1055	0.38	-0.9
1,144,194	-		Psest_1055	0.38	-2.1
1,144,194	-		Psest_1055	0.38	+0.1
1,144,194	-		Psest_1055	0.38	-0.0
1,144,253	+		Psest_1055	0.43	-0.8
1,144,253	+		Psest_1055	0.43	+0.0
1,144,254	-		Psest_1055	0.43	-0.9
1,144,254	-		Psest_1055	0.43	+0.1
1,144,254	-		Psest_1055	0.43	-1.3
1,144,254	-		Psest_1055	0.43	+0.1
1,144,310	+		Psest_1055	0.48	+0.6
1,144,310	+		Psest_1055	0.48	+0.4
1,144,400	+		Psest_1055	0.55	-1.1
1,144,400	+		Psest_1055	0.55	-0.2
1,144,450	-		Psest_1055	0.59	+2.7
1,144,450	-		Psest_1055	0.59	+0.7
1,144,487	+		Psest_1055	0.62	-0.5
1,144,487	+		Psest_1055	0.62	+0.5
1,144,487	+		Psest_1055	0.62	-1.5
1,144,487	+		Psest_1055	0.62	+0.4
1,144,488	-		Psest_1055	0.62	-1.7
1,144,488	-		Psest_1055	0.62	+0.1
1,144,488	-		Psest_1055	0.62	-0.9
1,144,488	-		Psest_1055	0.62	-0.2
1,144,488	-		Psest_1055	0.62	+0.3
1,144,488	-		Psest_1055	0.62	+0.3
1,144,488	-		Psest_1055	0.62	-0.3
1,144,488	-		Psest_1055	0.62	-0.3
1,144,501	+		Psest_1055	0.64	+0.6
1,144,502	-		Psest_1055	0.64	+2.1
1,144,625	+		Psest_1055	0.74	-0.5
1,144,626	-		Psest_1055	0.74	-0.8