Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0086 and Psest_0087 are separated by 71 nucleotides Psest_0087 and Psest_0088 are separated by 273 nucleotides Psest_0088 and Psest_0089 overlap by 10 nucleotides Psest_0089 and Psest_0090 are separated by 98 nucleotides
Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971
_0086
Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285
_0087
Psest_0088: Psest_0088 - phosphonate metabolism protein PhnP, at 89,559 to 90,308
_0088
Psest_0089: Psest_0089 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 90,299 to 90,853
_0089
Psest_0090: Psest_0090 - phosphonate metabolism protein PhnM, at 90,952 to 92,097
_0090
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 88.673 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 89.112 kb on + strand, within Psest_0087 at 89.112 kb on + strand, within Psest_0087 at 89.112 kb on + strand, within Psest_0087 at 89.113 kb on - strand, within Psest_0087 at 89.113 kb on - strand, within Psest_0087 at 89.429 kb on - strand at 89.460 kb on - strand at 89.560 kb on + strand at 89.561 kb on - strand at 89.561 kb on - strand at 89.561 kb on - strand at 89.801 kb on + strand, within Psest_0088 at 89.802 kb on - strand, within Psest_0088 at 89.834 kb on - strand, within Psest_0088 at 89.867 kb on - strand, within Psest_0088 at 89.983 kb on + strand, within Psest_0088 at 89.983 kb on + strand, within Psest_0088 at 89.984 kb on - strand, within Psest_0088 at 89.984 kb on - strand, within Psest_0088 at 89.984 kb on - strand, within Psest_0088 at 89.984 kb on - strand, within Psest_0088 at 90.259 kb on + strand at 90.259 kb on + strand at 90.384 kb on + strand, within Psest_0089 at 90.384 kb on + strand, within Psest_0089 at 90.384 kb on + strand, within Psest_0089 at 90.384 kb on + strand, within Psest_0089 at 90.384 kb on + strand, within Psest_0089 at 90.384 kb on + strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.385 kb on - strand, within Psest_0089 at 90.549 kb on + strand, within Psest_0089 at 90.621 kb on + strand, within Psest_0089 at 90.835 kb on - strand at 90.835 kb on - strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.898 kb on + strand at 90.899 kb on - strand at 90.899 kb on - strand at 91.010 kb on - strand at 91.010 kb on - strand at 91.010 kb on - strand at 91.010 kb on - strand at 91.010 kb on - strand at 91.182 kb on - strand, within Psest_0090
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 88,673 - Psest_0086 0.30 -2.0 88,769 - Psest_0086 0.52 -1.1 88,769 - Psest_0086 0.52 +1.1 88,769 - Psest_0086 0.52 -2.1 89,112 + Psest_0087 0.28 -1.2 89,112 + Psest_0087 0.28 +1.1 89,112 + Psest_0087 0.28 +1.4 89,113 - Psest_0087 0.29 -1.0 89,113 - Psest_0087 0.29 -1.3 89,429 - +0.5 89,460 - +0.7 89,560 + +1.8 89,561 - -1.0 89,561 - +1.0 89,561 - +1.2 89,801 + Psest_0088 0.32 -0.8 89,802 - Psest_0088 0.32 -1.4 89,834 - Psest_0088 0.37 -0.8 89,867 - Psest_0088 0.41 -0.4 89,983 + Psest_0088 0.57 -0.2 89,983 + Psest_0088 0.57 -0.8 89,984 - Psest_0088 0.57 -0.9 89,984 - Psest_0088 0.57 -0.5 89,984 - Psest_0088 0.57 -1.8 89,984 - Psest_0088 0.57 -0.2 90,259 + +0.0 90,259 + -0.5 90,384 + Psest_0089 0.15 -0.8 90,384 + Psest_0089 0.15 +0.5 90,384 + Psest_0089 0.15 +1.2 90,384 + Psest_0089 0.15 +2.6 90,384 + Psest_0089 0.15 +0.2 90,384 + Psest_0089 0.15 +2.8 90,385 - Psest_0089 0.15 +0.4 90,385 - Psest_0089 0.15 -2.5 90,385 - Psest_0089 0.15 +0.5 90,385 - Psest_0089 0.15 +1.1 90,385 - Psest_0089 0.15 -0.8 90,385 - Psest_0089 0.15 +0.4 90,385 - Psest_0089 0.15 +0.8 90,385 - Psest_0089 0.15 +2.4 90,549 + Psest_0089 0.45 +1.2 90,621 + Psest_0089 0.58 +0.8 90,835 - +1.2 90,835 - +1.2 90,898 + +0.2 90,898 + +1.8 90,898 + +0.0 90,898 + +0.5 90,898 + +1.0 90,898 + +0.0 90,898 + +1.8 90,898 + +0.2 90,899 - +0.2 90,899 - -0.2 91,010 - +1.2 91,010 - +3.1 91,010 - +1.5 91,010 - +0.8 91,010 - +0.8 91,182 - Psest_0090 0.20 -0.2
Or see this region's nucleotide sequence