Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0077

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0076 and Psest_0077 are separated by 125 nucleotidesPsest_0077 and Psest_0078 are separated by 30 nucleotidesPsest_0078 and Psest_0079 are separated by 94 nucleotides Psest_0076: Psest_0076 - NhaP-type Na+/H+ and K+/H+ antiporters, at 76,967 to 78,331 _0076 Psest_0077: Psest_0077 - luciferase family oxidoreductase, group 1, at 78,457 to 79,455 _0077 Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899 _0078 Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419 _0079 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.602 kb on - strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.745 kb on - strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.228 kb on + strandat 78.228 kb on + strandat 78.228 kb on + strandat 78.228 kb on + strandat 78.229 kb on - strandat 78.229 kb on - strandat 78.229 kb on - strandat 78.421 kb on + strandat 78.421 kb on + strandat 78.422 kb on - strandat 78.424 kb on + strandat 78.424 kb on + strandat 78.459 kb on - strandat 78.526 kb on - strandat 78.726 kb on - strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.840 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.894 kb on - strand, within Psest_0077at 79.460 kb on + strandat 79.733 kb on + strand, within Psest_0078at 79.734 kb on - strand, within Psest_0078at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.047 kb on - strand, within Psest_0079at 80.047 kb on - strand, within Psest_0079at 80.061 kb on + strand, within Psest_0079at 80.061 kb on + strand, within Psest_0079at 80.062 kb on - strand, within Psest_0079at 80.062 kb on - strand, within Psest_0079at 80.137 kb on - strand, within Psest_0079at 80.246 kb on + strand, within Psest_0079at 80.246 kb on + strand, within Psest_0079

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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77,601 + Psest_0076 0.46 +1.8
77,601 + Psest_0076 0.46 -1.1
77,601 + Psest_0076 0.46 +0.1
77,601 + Psest_0076 0.46 +0.1
77,602 - Psest_0076 0.47 +1.1
77,676 + Psest_0076 0.52 +0.5
77,676 + Psest_0076 0.52 +0.8
77,676 + Psest_0076 0.52 +1.1
77,677 - Psest_0076 0.52 -0.5
77,677 - Psest_0076 0.52 -1.8
77,677 - Psest_0076 0.52 +0.2
77,677 - Psest_0076 0.52 -1.3
77,745 - Psest_0076 0.57 -1.9
77,994 + Psest_0076 0.75 +0.2
77,994 + Psest_0076 0.75 +0.2
77,994 + Psest_0076 0.75 -0.9
77,994 + Psest_0076 0.75 -1.5
77,994 + Psest_0076 0.75 +0.8
77,995 - Psest_0076 0.75 +3.4
77,995 - Psest_0076 0.75 -1.8
77,995 - Psest_0076 0.75 -0.9
78,054 + Psest_0076 0.80 +2.3
78,054 + Psest_0076 0.80 -0.5
78,054 + Psest_0076 0.80 +0.8
78,055 - Psest_0076 0.80 +1.7
78,055 - Psest_0076 0.80 -1.0
78,055 - Psest_0076 0.80 -0.2
78,055 - Psest_0076 0.80 -0.8
78,055 - Psest_0076 0.80 +0.8
78,228 + -1.9
78,228 + -0.4
78,228 + +0.3
78,228 + -0.5
78,229 - +1.0
78,229 - +1.9
78,229 - +0.2
78,421 + +2.2
78,421 + -1.8
78,422 - -2.5
78,424 + +0.7
78,424 + -0.8
78,459 - +0.2
78,526 - +0.5
78,726 - Psest_0077 0.27 +2.1
78,797 + Psest_0077 0.34 +3.9
78,797 + Psest_0077 0.34 +0.9
78,797 + Psest_0077 0.34 +1.0
78,798 - Psest_0077 0.34 -0.1
78,798 - Psest_0077 0.34 +1.0
78,798 - Psest_0077 0.34 -0.5
78,798 - Psest_0077 0.34 +1.3
78,798 - Psest_0077 0.34 -1.7
78,840 - Psest_0077 0.38 +0.8
78,864 - Psest_0077 0.41 +0.5
78,864 - Psest_0077 0.41 +0.1
78,864 - Psest_0077 0.41 +4.6
78,894 - Psest_0077 0.44 -0.2
79,460 + -0.6
79,733 + Psest_0078 0.60 -0.5
79,734 - Psest_0078 0.60 -1.2
80,046 + Psest_0079 0.12 -0.2
80,046 + Psest_0079 0.12 -1.0
80,046 + Psest_0079 0.12 +0.8
80,046 + Psest_0079 0.12 -0.9
80,046 + Psest_0079 0.12 +2.1
80,046 + Psest_0079 0.12 +0.7
80,047 - Psest_0079 0.12 -1.0
80,047 - Psest_0079 0.12 -2.0
80,061 + Psest_0079 0.16 +1.2
80,061 + Psest_0079 0.16 +1.1
80,062 - Psest_0079 0.16 -0.7
80,062 - Psest_0079 0.16 +0.2
80,137 - Psest_0079 0.34 -0.8
80,246 + Psest_0079 0.59 -1.5
80,246 + Psest_0079 0.59 -1.0

Or see this region's nucleotide sequence