Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0767

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0765 and Psest_0766 are separated by 12 nucleotidesPsest_0766 and Psest_0767 are separated by 213 nucleotidesPsest_0767 and Psest_0768 are separated by 3 nucleotidesPsest_0768 and Psest_0769 are separated by 135 nucleotides Psest_0765: Psest_0765 - hypothetical protein, at 835,270 to 835,599 _0765 Psest_0766: Psest_0766 - hypothetical protein, at 835,612 to 836,016 _0766 Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636 _0767 Psest_0768: Psest_0768 - Uncharacterized conserved protein, at 837,640 to 838,467 _0768 Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331 _0769 Position (kb) 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.282 kb on + strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.283 kb on - strandat 835.354 kb on + strand, within Psest_0765at 835.354 kb on + strand, within Psest_0765at 835.355 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.357 kb on - strand, within Psest_0765at 835.502 kb on + strand, within Psest_0765at 835.502 kb on + strand, within Psest_0765at 835.503 kb on - strand, within Psest_0765at 835.565 kb on + strand, within Psest_0765at 835.566 kb on - strand, within Psest_0765at 835.569 kb on + strandat 835.570 kb on - strandat 835.682 kb on + strand, within Psest_0766at 836.235 kb on + strandat 836.235 kb on + strandat 836.267 kb on - strandat 836.267 kb on - strandat 836.418 kb on + strand, within Psest_0767at 836.418 kb on + strand, within Psest_0767at 836.418 kb on + strand, within Psest_0767at 836.419 kb on - strand, within Psest_0767at 836.474 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.612 kb on + strand, within Psest_0767at 836.613 kb on - strand, within Psest_0767at 836.613 kb on - strand, within Psest_0767at 836.613 kb on - strand, within Psest_0767at 836.827 kb on + strand, within Psest_0767at 836.828 kb on - strand, within Psest_0767at 836.828 kb on - strand, within Psest_0767at 837.071 kb on + strand, within Psest_0767at 837.072 kb on - strand, within Psest_0767at 837.072 kb on - strand, within Psest_0767at 837.441 kb on + strand, within Psest_0767at 837.442 kb on - strand, within Psest_0767at 837.442 kb on - strand, within Psest_0767at 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.768 kb on - strand, within Psest_0768at 837.939 kb on + strand, within Psest_0768at 837.940 kb on - strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.091 kb on + strand, within Psest_0768at 838.184 kb on + strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.242 kb on + strand, within Psest_0768at 838.243 kb on - strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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835,282 + -0.6
835,282 + -1.2
835,282 + +0.4
835,282 + -1.8
835,282 + -2.2
835,282 + -0.5
835,282 + -0.1
835,282 + -1.5
835,282 + -1.1
835,283 - -0.1
835,283 - -3.0
835,283 - +0.2
835,283 - -0.6
835,354 + Psest_0765 0.25 -0.1
835,354 + Psest_0765 0.25 -0.8
835,355 - Psest_0765 0.26 -1.0
835,357 - Psest_0765 0.26 +0.0
835,357 - Psest_0765 0.26 -1.0
835,357 - Psest_0765 0.26 -1.5
835,502 + Psest_0765 0.70 -0.1
835,502 + Psest_0765 0.70 -0.4
835,503 - Psest_0765 0.71 +3.1
835,565 + Psest_0765 0.89 -3.3
835,566 - Psest_0765 0.90 +0.4
835,569 + +0.9
835,570 - -0.1
835,682 + Psest_0766 0.17 +1.1
836,235 + +0.0
836,235 + -1.0
836,267 - -1.4
836,267 - -0.9
836,418 + Psest_0767 0.13 +1.4
836,418 + Psest_0767 0.13 +0.4
836,418 + Psest_0767 0.13 -0.6
836,419 - Psest_0767 0.13 +0.4
836,474 + Psest_0767 0.17 +1.0
836,612 + Psest_0767 0.27 -1.0
836,612 + Psest_0767 0.27 -0.6
836,612 + Psest_0767 0.27 -1.8
836,612 + Psest_0767 0.27 +0.0
836,612 + Psest_0767 0.27 -0.1
836,612 + Psest_0767 0.27 -1.4
836,612 + Psest_0767 0.27 -1.4
836,613 - Psest_0767 0.27 -0.0
836,613 - Psest_0767 0.27 -1.7
836,613 - Psest_0767 0.27 +0.8
836,827 + Psest_0767 0.42 -0.1
836,828 - Psest_0767 0.43 +2.0
836,828 - Psest_0767 0.43 -0.0
837,071 + Psest_0767 0.60 -2.5
837,072 - Psest_0767 0.60 -0.3
837,072 - Psest_0767 0.60 +0.7
837,441 + Psest_0767 0.86 +0.1
837,442 - Psest_0767 0.86 -1.0
837,442 - Psest_0767 0.86 -0.4
837,671 + +1.1
837,671 + +0.7
837,671 + -1.0
837,671 + +1.6
837,672 - -1.0
837,672 - +0.5
837,672 - +1.4
837,768 - Psest_0768 0.15 -0.2
837,939 + Psest_0768 0.36 +0.7
837,940 - Psest_0768 0.36 +0.4
838,031 + Psest_0768 0.47 +1.0
838,031 + Psest_0768 0.47 -0.7
838,032 - Psest_0768 0.47 -1.2
838,032 - Psest_0768 0.47 -0.0
838,032 - Psest_0768 0.47 -1.7
838,032 - Psest_0768 0.47 -0.9
838,032 - Psest_0768 0.47 +1.0
838,091 + Psest_0768 0.54 -0.9
838,184 + Psest_0768 0.66 +0.5
838,185 - Psest_0768 0.66 +0.6
838,185 - Psest_0768 0.66 -0.3
838,242 + Psest_0768 0.73 -0.2
838,243 - Psest_0768 0.73 -0.9
838,244 + Psest_0768 0.73 +1.4
838,244 + Psest_0768 0.73 +0.2
838,328 + Psest_0768 0.83 -1.5
838,328 + Psest_0768 0.83 -2.6
838,328 + Psest_0768 0.83 -0.9
838,328 + Psest_0768 0.83 -1.4
838,329 - Psest_0768 0.83 -0.4
838,329 - Psest_0768 0.83 -2.9
838,355 + Psest_0768 0.86 -0.3
838,355 + Psest_0768 0.86 -1.5
838,355 + Psest_0768 0.86 -1.2
838,355 + Psest_0768 0.86 +1.8
838,355 + Psest_0768 0.86 -0.4
838,355 + Psest_0768 0.86 +0.5
838,356 - Psest_0768 0.86 +0.9
838,356 - Psest_0768 0.86 -1.3
838,356 - Psest_0768 0.86 -1.4
838,526 + -1.5

Or see this region's nucleotide sequence