Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0672

Experiment: Def 2-Furfuraldehyde 0.032 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0671 and Psest_0672 are separated by 154 nucleotidesPsest_0672 and Psest_0673 are separated by 204 nucleotides Psest_0671: Psest_0671 - NAD-dependent aldehyde dehydrogenases, at 731,821 to 733,341 _0671 Psest_0672: Psest_0672 - Alcohol dehydrogenase, class IV, at 733,496 to 734,644 _0672 Psest_0673: Psest_0673 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 734,849 to 736,198 _0673 Position (kb) 733 734 735Strain fitness (log2 ratio) -2 -1 0 1 2 3at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671at 732.754 kb on - strand, within Psest_0671at 732.788 kb on - strand, within Psest_0671at 732.897 kb on - strand, within Psest_0671at 732.897 kb on - strand, within Psest_0671at 732.962 kb on + strand, within Psest_0671at 732.963 kb on - strand, within Psest_0671at 733.238 kb on + strandat 733.238 kb on + strandat 733.239 kb on - strandat 733.239 kb on - strandat 733.239 kb on - strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.335 kb on - strandat 733.405 kb on - strandat 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.866 kb on + strand, within Psest_0672at 733.867 kb on - strand, within Psest_0672at 733.867 kb on - strand, within Psest_0672at 733.914 kb on + strand, within Psest_0672at 733.914 kb on + strand, within Psest_0672at 733.915 kb on - strand, within Psest_0672at 733.915 kb on - strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.171 kb on + strand, within Psest_0672at 734.289 kb on + strand, within Psest_0672at 734.289 kb on + strand, within Psest_0672at 734.300 kb on - strand, within Psest_0672at 734.562 kb on + strandat 734.562 kb on + strandat 734.562 kb on + strandat 734.563 kb on - strandat 734.563 kb on - strandat 734.854 kb on + strandat 734.861 kb on - strandat 735.086 kb on + strand, within Psest_0673at 735.086 kb on + strand, within Psest_0673at 735.086 kb on + strand, within Psest_0673at 735.087 kb on - strand, within Psest_0673at 735.111 kb on - strand, within Psest_0673at 735.332 kb on + strand, within Psest_0673

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
remove
732,530 + Psest_0671 0.47 -2.6
732,530 + Psest_0671 0.47 -0.9
732,530 + Psest_0671 0.47 -1.9
732,531 - Psest_0671 0.47 -1.6
732,531 - Psest_0671 0.47 +1.0
732,754 - Psest_0671 0.61 -1.7
732,788 - Psest_0671 0.64 -1.0
732,897 - Psest_0671 0.71 -0.0
732,897 - Psest_0671 0.71 -2.5
732,962 + Psest_0671 0.75 -0.5
732,963 - Psest_0671 0.75 +1.0
733,238 + +0.3
733,238 + -2.0
733,239 - -0.0
733,239 - +2.0
733,239 - -0.6
733,334 + +0.2
733,334 + -1.8
733,334 + -0.2
733,334 + +1.0
733,334 + +0.4
733,334 + -0.1
733,335 - +0.3
733,405 - -0.5
733,776 + Psest_0672 0.24 +2.0
733,776 + Psest_0672 0.24 +1.7
733,776 + Psest_0672 0.24 -1.6
733,776 + Psest_0672 0.24 +1.4
733,776 + Psest_0672 0.24 -0.8
733,777 - Psest_0672 0.24 +0.3
733,777 - Psest_0672 0.24 -1.5
733,777 - Psest_0672 0.24 -1.5
733,777 - Psest_0672 0.24 -1.0
733,777 - Psest_0672 0.24 -0.6
733,777 - Psest_0672 0.24 -0.6
733,777 - Psest_0672 0.24 -1.3
733,830 + Psest_0672 0.29 -0.6
733,830 + Psest_0672 0.29 +1.2
733,830 + Psest_0672 0.29 +0.2
733,830 + Psest_0672 0.29 -0.8
733,830 + Psest_0672 0.29 -0.3
733,831 - Psest_0672 0.29 -1.6
733,831 - Psest_0672 0.29 -1.9
733,831 - Psest_0672 0.29 +1.6
733,866 + Psest_0672 0.32 -1.5
733,867 - Psest_0672 0.32 +0.2
733,867 - Psest_0672 0.32 -0.8
733,914 + Psest_0672 0.36 +0.2
733,914 + Psest_0672 0.36 +1.0
733,915 - Psest_0672 0.36 +2.2
733,915 - Psest_0672 0.36 +0.5
734,040 + Psest_0672 0.47 +1.2
734,040 + Psest_0672 0.47 -0.1
734,040 + Psest_0672 0.47 +1.5
734,040 + Psest_0672 0.47 +1.0
734,040 + Psest_0672 0.47 +2.2
734,040 + Psest_0672 0.47 -0.9
734,040 + Psest_0672 0.47 -0.6
734,041 - Psest_0672 0.47 -1.5
734,041 - Psest_0672 0.47 +1.7
734,041 - Psest_0672 0.47 -0.3
734,041 - Psest_0672 0.47 -1.3
734,171 + Psest_0672 0.59 +0.4
734,289 + Psest_0672 0.69 +1.0
734,289 + Psest_0672 0.69 +0.2
734,300 - Psest_0672 0.70 -0.9
734,562 + +3.0
734,562 + +1.0
734,562 + -2.0
734,563 - -0.0
734,563 - -0.6
734,854 + -1.2
734,861 - +2.0
735,086 + Psest_0673 0.18 -1.5
735,086 + Psest_0673 0.18 -1.3
735,086 + Psest_0673 0.18 -0.7
735,087 - Psest_0673 0.18 -1.0
735,111 - Psest_0673 0.19 -2.3
735,332 + Psest_0673 0.36 -1.6

Or see this region's nucleotide sequence