Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0651

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0649 and Psest_0650 are separated by 196 nucleotidesPsest_0650 and Psest_0651 are separated by 94 nucleotidesPsest_0651 and Psest_0652 overlap by 7 nucleotides Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841 _0649 Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535 _0650 Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023 _0651 Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952 _0652 Position (kb) 706 707 708 709 710Strain fitness (log2 ratio) -2 -1 0 1 2at 706.040 kb on - strandat 706.089 kb on - strand, within Psest_0650at 706.089 kb on - strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.201 kb on - strand, within Psest_0650at 706.351 kb on + strand, within Psest_0650at 706.351 kb on + strand, within Psest_0650at 706.352 kb on - strand, within Psest_0650at 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.568 kb on - strandat 706.712 kb on + strandat 706.712 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.716 kb on - strandat 706.822 kb on - strandat 706.922 kb on + strand, within Psest_0651at 706.922 kb on + strand, within Psest_0651at 706.922 kb on + strand, within Psest_0651at 706.922 kb on + strand, within Psest_0651at 706.922 kb on + strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.923 kb on - strand, within Psest_0651at 706.938 kb on - strand, within Psest_0651at 707.086 kb on + strand, within Psest_0651at 707.086 kb on + strand, within Psest_0651at 707.357 kb on + strand, within Psest_0651at 707.450 kb on + strand, within Psest_0651at 707.451 kb on - strand, within Psest_0651at 707.489 kb on + strand, within Psest_0651at 707.489 kb on + strand, within Psest_0651at 707.582 kb on + strand, within Psest_0651at 707.582 kb on + strand, within Psest_0651at 707.819 kb on + strand, within Psest_0651at 707.819 kb on + strand, within Psest_0651at 707.819 kb on + strand, within Psest_0651at 707.820 kb on - strand, within Psest_0651at 707.820 kb on - strand, within Psest_0651at 707.820 kb on - strand, within Psest_0651at 707.876 kb on + strand, within Psest_0651at 707.876 kb on + strand, within Psest_0651at 707.877 kb on - strand, within Psest_0651at 707.877 kb on - strand, within Psest_0651at 707.877 kb on - strand, within Psest_0651at 707.877 kb on - strand, within Psest_0651at 707.993 kb on + strand, within Psest_0651at 708.142 kb on - strand, within Psest_0651at 708.447 kb on - strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.612 kb on - strand, within Psest_0651at 709.003 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.265 kb on + strand, within Psest_0652at 709.265 kb on + strand, within Psest_0652at 709.661 kb on + strand, within Psest_0652at 709.662 kb on - strand, within Psest_0652at 709.768 kb on - strand, within Psest_0652at 709.840 kb on + strand, within Psest_0652at 709.852 kb on + strand, within Psest_0652at 709.952 kb on + strandat 709.952 kb on + strandat 709.952 kb on + strandat 709.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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706,040 - +0.9
706,089 - Psest_0650 0.10 -0.2
706,089 - Psest_0650 0.10 -0.3
706,200 + Psest_0650 0.33 +0.2
706,200 + Psest_0650 0.33 +1.4
706,200 + Psest_0650 0.33 -0.9
706,201 - Psest_0650 0.33 +0.4
706,351 + Psest_0650 0.63 +1.0
706,351 + Psest_0650 0.63 -2.1
706,352 - Psest_0650 0.63 -1.1
706,492 + -0.6
706,492 + +0.8
706,492 + -2.6
706,492 + +2.0
706,492 + -0.2
706,492 + -0.6
706,492 + -0.6
706,492 + -0.0
706,492 + -0.2
706,492 + +2.6
706,493 - -1.2
706,493 - -0.6
706,493 - -0.3
706,493 - -0.2
706,568 - -0.7
706,712 + -0.0
706,712 + -1.1
706,715 + -0.6
706,715 + +0.6
706,715 + -0.6
706,715 + +1.0
706,716 - +0.1
706,822 - +0.4
706,922 + Psest_0651 0.12 +1.0
706,922 + Psest_0651 0.12 +0.4
706,922 + Psest_0651 0.12 +0.4
706,922 + Psest_0651 0.12 -1.5
706,922 + Psest_0651 0.12 -0.1
706,923 - Psest_0651 0.12 -1.1
706,923 - Psest_0651 0.12 +0.4
706,923 - Psest_0651 0.12 -1.7
706,923 - Psest_0651 0.12 +0.2
706,923 - Psest_0651 0.12 -2.3
706,923 - Psest_0651 0.12 -0.7
706,923 - Psest_0651 0.12 +1.6
706,938 - Psest_0651 0.13 +0.4
707,086 + Psest_0651 0.19 -0.6
707,086 + Psest_0651 0.19 +0.4
707,357 + Psest_0651 0.30 -0.6
707,450 + Psest_0651 0.34 +0.8
707,451 - Psest_0651 0.34 -0.0
707,489 + Psest_0651 0.36 +0.8
707,489 + Psest_0651 0.36 -0.8
707,582 + Psest_0651 0.40 -0.0
707,582 + Psest_0651 0.40 +0.2
707,819 + Psest_0651 0.50 +1.0
707,819 + Psest_0651 0.50 +0.1
707,819 + Psest_0651 0.50 +1.0
707,820 - Psest_0651 0.50 -0.3
707,820 - Psest_0651 0.50 +1.0
707,820 - Psest_0651 0.50 -0.3
707,876 + Psest_0651 0.52 +0.4
707,876 + Psest_0651 0.52 +0.5
707,877 - Psest_0651 0.52 -0.6
707,877 - Psest_0651 0.52 -0.7
707,877 - Psest_0651 0.52 +0.4
707,877 - Psest_0651 0.52 +1.2
707,993 + Psest_0651 0.57 +1.2
708,142 - Psest_0651 0.63 +2.0
708,447 - Psest_0651 0.76 -1.5
708,503 + Psest_0651 0.78 -0.0
708,503 + Psest_0651 0.78 -1.6
708,504 - Psest_0651 0.78 -0.7
708,504 - Psest_0651 0.78 +0.4
708,552 - Psest_0651 0.80 +0.2
708,552 - Psest_0651 0.80 -0.3
708,552 - Psest_0651 0.80 -0.6
708,611 + Psest_0651 0.83 -0.2
708,611 + Psest_0651 0.83 -1.3
708,612 - Psest_0651 0.83 -0.6
709,003 + -1.3
709,093 + -1.5
709,093 + +1.2
709,093 + +0.4
709,093 + +0.5
709,093 + +2.3
709,093 + +1.6
709,093 + +0.4
709,094 - +0.6
709,094 - -0.3
709,094 - +1.1
709,094 - +0.4
709,094 - +0.7
709,094 - -0.0
709,094 - +1.0
709,094 - +0.4
709,265 + Psest_0652 0.26 -0.8
709,265 + Psest_0652 0.26 -0.1
709,661 + Psest_0652 0.69 -0.0
709,662 - Psest_0652 0.69 -0.0
709,768 - Psest_0652 0.80 -0.0
709,840 + Psest_0652 0.88 -0.0
709,852 + Psest_0652 0.89 +0.8
709,952 + -0.6
709,952 + +0.2
709,952 + -0.3
709,953 - -1.7

Or see this region's nucleotide sequence