Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0633 and Psest_0634 overlap by 11 nucleotides Psest_0634 and Psest_0635 are separated by 84 nucleotides
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402
_0634
Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637
_0635
Position (kb) 687
688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 686.180 kb on + strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.181 kb on - strand, within Psest_0633 at 686.198 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.366 kb on + strand, within Psest_0633 at 686.484 kb on + strand, within Psest_0633 at 686.514 kb on + strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.597 kb on + strand, within Psest_0633 at 686.598 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 687.085 kb on - strand at 687.130 kb on + strand at 687.131 kb on - strand at 687.133 kb on - strand at 687.261 kb on + strand at 687.315 kb on + strand at 687.315 kb on + strand at 687.352 kb on + strand, within Psest_0634 at 687.353 kb on - strand, within Psest_0634 at 687.531 kb on + strand, within Psest_0634 at 687.673 kb on + strand, within Psest_0634 at 687.675 kb on + strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.758 kb on + strand, within Psest_0634 at 687.882 kb on + strand, within Psest_0634 at 687.982 kb on - strand, within Psest_0634 at 688.076 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.212 kb on + strand, within Psest_0634 at 688.216 kb on - strand, within Psest_0634 at 688.755 kb on + strand, within Psest_0634 at 688.782 kb on - strand at 688.889 kb on - strand, within Psest_0634 at 688.889 kb on - strand, within Psest_0634 at 688.923 kb on + strand, within Psest_0634 at 688.924 kb on - strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.065 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.108 kb on + strand, within Psest_0634 at 689.109 kb on - strand, within Psest_0634 at 689.239 kb on + strand at 689.239 kb on + strand at 689.240 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.270 kb on - strand at 689.366 kb on - strand at 689.439 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.452 kb on + strand at 689.460 kb on + strand at 689.460 kb on + strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.461 kb on - strand at 689.466 kb on + strand at 690.059 kb on + strand, within Psest_0635 at 690.279 kb on + strand, within Psest_0635
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 686,180 + Psest_0633 0.55 -0.6 686,180 + Psest_0633 0.55 +0.0 686,181 - Psest_0633 0.55 +0.4 686,198 + Psest_0633 0.56 +2.0 686,244 + Psest_0633 0.58 +2.0 686,244 + Psest_0633 0.58 +2.0 686,245 - Psest_0633 0.58 -0.3 686,245 - Psest_0633 0.58 +0.4 686,366 + Psest_0633 0.64 -1.8 686,484 + Psest_0633 0.69 -2.1 686,514 + Psest_0633 0.71 +0.0 686,556 - Psest_0633 0.73 -2.0 686,556 - Psest_0633 0.73 +1.0 686,597 + Psest_0633 0.75 -0.3 686,598 - Psest_0633 0.75 +1.4 686,856 - Psest_0633 0.87 +2.0 686,856 - Psest_0633 0.87 -0.6 687,085 - -0.3 687,130 + -0.6 687,131 - -0.4 687,133 - +0.1 687,261 + +0.4 687,315 + +1.0 687,315 + -1.4 687,352 + Psest_0634 0.10 -1.1 687,353 - Psest_0634 0.10 -0.3 687,531 + Psest_0634 0.18 +1.0 687,673 + Psest_0634 0.24 +0.0 687,675 + Psest_0634 0.24 +0.0 687,676 - Psest_0634 0.24 -2.8 687,676 - Psest_0634 0.24 +0.4 687,676 - Psest_0634 0.24 -0.3 687,758 + Psest_0634 0.28 +0.0 687,882 + Psest_0634 0.33 +1.0 687,982 - Psest_0634 0.38 +0.2 688,076 + Psest_0634 0.42 +1.0 688,212 + Psest_0634 0.48 +0.4 688,212 + Psest_0634 0.48 +2.0 688,216 - Psest_0634 0.48 +0.4 688,755 + Psest_0634 0.72 +0.3 688,782 - +1.0 688,889 - Psest_0634 0.77 -1.0 688,889 - Psest_0634 0.77 +0.7 688,923 + Psest_0634 0.79 -0.6 688,924 - Psest_0634 0.79 -2.1 689,065 + Psest_0634 0.85 -0.6 689,065 + Psest_0634 0.85 -1.3 689,108 + Psest_0634 0.87 +2.0 689,108 + Psest_0634 0.87 -0.3 689,108 + Psest_0634 0.87 -1.9 689,108 + Psest_0634 0.87 +1.0 689,109 - Psest_0634 0.87 +1.7 689,239 + +0.0 689,239 + +1.0 689,240 - -0.1 689,270 - +0.4 689,270 - -0.3 689,270 - -0.5 689,270 - -0.6 689,366 - -1.6 689,439 + +1.1 689,452 + -0.6 689,452 + +0.5 689,452 + +2.0 689,460 + +2.0 689,460 + +0.4 689,461 - -0.3 689,461 - +1.0 689,461 - +1.0 689,461 - +0.4 689,466 + +4.0 690,059 + Psest_0635 0.27 +0.0 690,279 + Psest_0635 0.37 +1.5
Or see this region's nucleotide sequence