Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0488 and Psest_0489 are separated by 201 nucleotides Psest_0489 and Psest_0490 are separated by 108 nucleotides
Psest_0488: Psest_0488 - Uncharacterized membrane protein affecting hemolysin expression, at 539,230 to 540,762
_0488
Psest_0489: Psest_0489 - phosphoserine phosphatase SerB, at 540,964 to 542,178
_0489
Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360
_0490
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.803 kb on - strand at 540.803 kb on - strand at 540.803 kb on - strand at 540.803 kb on - strand at 540.807 kb on - strand at 540.869 kb on + strand at 540.924 kb on + strand at 540.924 kb on + strand at 540.924 kb on + strand at 540.924 kb on + strand at 540.924 kb on + strand at 540.925 kb on - strand at 540.925 kb on - strand at 541.172 kb on - strand, within Psest_0489 at 541.172 kb on - strand, within Psest_0489 at 541.327 kb on + strand, within Psest_0489 at 541.348 kb on - strand, within Psest_0489 at 541.545 kb on - strand, within Psest_0489 at 541.766 kb on + strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.828 kb on + strand, within Psest_0489 at 541.868 kb on - strand, within Psest_0489 at 542.012 kb on + strand, within Psest_0489 at 542.140 kb on + strand at 542.176 kb on + strand at 542.176 kb on + strand at 542.176 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.253 kb on - strand at 542.253 kb on - strand at 542.253 kb on - strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.370 kb on - strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.437 kb on - strand, within Psest_0490 at 542.531 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.078 kb on - strand, within Psest_0490
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 540,803 - -0.0 540,803 - -0.9 540,803 - -0.0 540,803 - -0.7 540,807 - -1.0 540,869 + +0.4 540,924 + -1.9 540,924 + +0.3 540,924 + -0.3 540,924 + +0.7 540,924 + -2.1 540,925 - -1.9 540,925 - -0.6 541,172 - Psest_0489 0.17 -0.3 541,172 - Psest_0489 0.17 -0.6 541,327 + Psest_0489 0.30 -0.6 541,348 - Psest_0489 0.32 -0.0 541,545 - Psest_0489 0.48 -0.3 541,766 + Psest_0489 0.66 -1.7 541,767 - Psest_0489 0.66 -1.7 541,767 - Psest_0489 0.66 -2.1 541,767 - Psest_0489 0.66 -1.9 541,828 + Psest_0489 0.71 -0.8 541,868 - Psest_0489 0.74 -1.2 542,012 + Psest_0489 0.86 -0.0 542,140 + +0.4 542,176 + +0.8 542,176 + +0.7 542,176 + +2.0 542,252 + -0.3 542,252 + +1.0 542,252 + +0.4 542,252 + +0.8 542,252 + -0.0 542,252 + +0.1 542,252 + +0.1 542,252 + -0.3 542,253 - -0.6 542,253 - -0.3 542,253 - +1.2 542,369 + -1.1 542,369 + -2.1 542,369 + +1.5 542,370 - +0.3 542,373 + +0.4 542,373 + +0.2 542,373 + +1.1 542,373 + +0.5 542,373 + -0.8 542,373 + +1.1 542,373 + +0.5 542,373 + +0.7 542,373 + +0.2 542,373 + +0.4 542,373 + +0.6 542,374 - +1.3 542,374 - -2.7 542,374 - -0.7 542,374 - +1.2 542,374 - +1.4 542,374 - -1.0 542,374 - -0.5 542,374 - -0.3 542,374 - +0.5 542,437 - Psest_0490 0.14 -1.0 542,531 + Psest_0490 0.23 +0.6 542,665 + Psest_0490 0.35 +0.3 542,665 + Psest_0490 0.35 -0.8 542,665 + Psest_0490 0.35 -1.3 542,666 - Psest_0490 0.35 -0.3 542,666 - Psest_0490 0.35 +2.8 542,666 - Psest_0490 0.35 +1.6 542,666 - Psest_0490 0.35 +0.7 542,666 - Psest_0490 0.35 -0.3 542,666 - Psest_0490 0.35 +0.4 542,966 + Psest_0490 0.63 +1.0 542,966 + Psest_0490 0.63 -1.6 542,967 - Psest_0490 0.63 -0.3 542,967 - Psest_0490 0.63 -1.5 542,967 - Psest_0490 0.63 +0.1 542,967 - Psest_0490 0.63 -1.4 542,967 - Psest_0490 0.63 +0.2 543,077 + Psest_0490 0.74 -0.8 543,077 + Psest_0490 0.74 -1.0 543,078 - Psest_0490 0.74 +0.8
Or see this region's nucleotide sequence