Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4175 and Psest_4176 overlap by 4 nucleotides Psest_4176 and Psest_4177 overlap by 4 nucleotides Psest_4177 and Psest_4178 are separated by 9 nucleotides Psest_4178 and Psest_4179 overlap by 7 nucleotides
Psest_4175: Psest_4175 - Flagellar motor switch/type III secretory pathway protein, at 4,354,321 to 4,355,160
_4175
Psest_4176: Psest_4176 - flagellar motor switch protein FliN, at 4,355,157 to 4,355,528
_4176
Psest_4177: Psest_4177 - flagellar biosynthetic protein FliP, at 4,355,525 to 4,356,280
_4177
Psest_4178: Psest_4178 - hypothetical protein, at 4,356,290 to 4,357,162
_4178
Psest_4179: Psest_4179 - Flagellar biosynthesis pathway, component FliQ, at 4,357,156 to 4,357,428
_4179
Position (kb)
4355
4356
4357 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4354.550 kb on - strand, within Psest_4175 at 4354.550 kb on - strand, within Psest_4175 at 4354.600 kb on - strand, within Psest_4175 at 4354.600 kb on - strand, within Psest_4175 at 4354.637 kb on + strand, within Psest_4175 at 4354.637 kb on + strand, within Psest_4175 at 4354.638 kb on - strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.715 kb on + strand, within Psest_4175 at 4354.716 kb on - strand, within Psest_4175 at 4354.777 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.799 kb on - strand, within Psest_4175 at 4354.799 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.827 kb on + strand, within Psest_4175 at 4354.827 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4355.090 kb on - strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.131 kb on - strand at 4355.131 kb on - strand at 4355.131 kb on - strand at 4355.748 kb on + strand, within Psest_4177 at 4355.749 kb on - strand, within Psest_4177 at 4355.802 kb on + strand, within Psest_4177 at 4355.876 kb on + strand, within Psest_4177 at 4356.278 kb on + strand at 4356.278 kb on + strand at 4356.279 kb on - strand at 4356.279 kb on - strand at 4356.369 kb on + strand at 4356.680 kb on - strand, within Psest_4178 at 4356.680 kb on - strand, within Psest_4178 at 4356.729 kb on - strand, within Psest_4178 at 4356.729 kb on - strand, within Psest_4178 at 4356.926 kb on + strand, within Psest_4178 at 4356.926 kb on + strand, within Psest_4178 at 4357.086 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.125 kb on - strand at 4357.126 kb on + strand at 4357.126 kb on + strand at 4357.135 kb on + strand at 4357.135 kb on + strand at 4357.160 kb on + strand at 4357.160 kb on + strand at 4357.161 kb on - strand at 4357.161 kb on - strand at 4357.161 kb on - strand at 4357.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 4,354,550 - Psest_4175 0.27 +1.9 4,354,550 - Psest_4175 0.27 -1.3 4,354,600 - Psest_4175 0.33 +0.1 4,354,600 - Psest_4175 0.33 -1.4 4,354,637 + Psest_4175 0.38 -0.2 4,354,637 + Psest_4175 0.38 -0.6 4,354,638 - Psest_4175 0.38 +0.3 4,354,665 + Psest_4175 0.41 -0.1 4,354,665 + Psest_4175 0.41 -1.4 4,354,665 + Psest_4175 0.41 -1.3 4,354,715 + Psest_4175 0.47 -1.4 4,354,716 - Psest_4175 0.47 +0.9 4,354,777 + Psest_4175 0.54 -2.9 4,354,798 + Psest_4175 0.57 +1.9 4,354,798 + Psest_4175 0.57 +1.9 4,354,798 + Psest_4175 0.57 +0.3 4,354,798 + Psest_4175 0.57 -2.4 4,354,799 - Psest_4175 0.57 -0.8 4,354,799 - Psest_4175 0.57 -1.1 4,354,817 - Psest_4175 0.59 -0.1 4,354,817 - Psest_4175 0.59 +1.9 4,354,817 - Psest_4175 0.59 -0.9 4,354,817 - Psest_4175 0.59 -2.9 4,354,817 - Psest_4175 0.59 -1.5 4,354,827 + Psest_4175 0.60 -1.5 4,354,827 + Psest_4175 0.60 -0.2 4,354,852 + Psest_4175 0.63 -0.7 4,354,852 + Psest_4175 0.63 -0.6 4,354,852 + Psest_4175 0.63 +0.2 4,354,852 + Psest_4175 0.63 -1.0 4,354,852 + Psest_4175 0.63 -0.1 4,354,852 + Psest_4175 0.63 -2.1 4,354,852 + Psest_4175 0.63 -0.1 4,354,852 + Psest_4175 0.63 +1.5 4,354,853 - Psest_4175 0.63 +1.1 4,354,853 - Psest_4175 0.63 -2.4 4,354,853 - Psest_4175 0.63 -0.4 4,354,853 - Psest_4175 0.63 -1.1 4,354,853 - Psest_4175 0.63 -0.1 4,354,853 - Psest_4175 0.63 -1.5 4,354,853 - Psest_4175 0.63 -2.6 4,354,853 - Psest_4175 0.63 -0.0 4,354,853 - Psest_4175 0.63 +0.0 4,354,853 - Psest_4175 0.63 +1.4 4,354,853 - Psest_4175 0.63 -1.3 4,354,853 - Psest_4175 0.63 +0.8 4,354,853 - Psest_4175 0.63 +1.1 4,354,853 - Psest_4175 0.63 -2.0 4,354,853 - Psest_4175 0.63 +0.3 4,354,858 + Psest_4175 0.64 -0.5 4,354,858 + Psest_4175 0.64 -0.5 4,354,858 + Psest_4175 0.64 +1.5 4,354,859 - Psest_4175 0.64 -1.3 4,354,859 - Psest_4175 0.64 +0.1 4,354,859 - Psest_4175 0.64 -0.7 4,354,859 - Psest_4175 0.64 -0.4 4,354,859 - Psest_4175 0.64 -0.1 4,354,859 - Psest_4175 0.64 -0.5 4,355,090 - -0.6 4,355,130 + -1.0 4,355,130 + -0.3 4,355,130 + +0.3 4,355,130 + -0.7 4,355,130 + -2.0 4,355,131 - -0.5 4,355,131 - -1.0 4,355,131 - +0.6 4,355,748 + Psest_4177 0.29 -0.7 4,355,749 - Psest_4177 0.30 -0.9 4,355,802 + Psest_4177 0.37 -0.5 4,355,876 + Psest_4177 0.46 -1.8 4,356,278 + -0.5 4,356,278 + +0.9 4,356,279 - +0.3 4,356,279 - -2.3 4,356,369 + +1.7 4,356,680 - Psest_4178 0.45 -1.9 4,356,680 - Psest_4178 0.45 -1.3 4,356,729 - Psest_4178 0.50 +0.9 4,356,729 - Psest_4178 0.50 +1.1 4,356,926 + Psest_4178 0.73 -0.7 4,356,926 + Psest_4178 0.73 +0.1 4,357,086 - +0.5 4,357,125 - -1.8 4,357,125 - +1.3 4,357,125 - +1.0 4,357,125 - -0.3 4,357,125 - +0.8 4,357,125 - +2.1 4,357,125 - +0.8 4,357,125 - -0.9 4,357,125 - +1.0 4,357,125 - +1.2 4,357,125 - +0.0 4,357,126 + +0.7 4,357,126 + -0.1 4,357,135 + -0.1 4,357,135 + -1.4 4,357,160 + +0.5 4,357,160 + -0.3 4,357,161 - +0.0 4,357,161 - +0.6 4,357,161 - +1.5 4,357,161 - +0.8
Or see this region's nucleotide sequence