Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4133 and Psest_4134 are separated by 2 nucleotides Psest_4134 and Psest_4135 are separated by 88 nucleotides Psest_4135 and Psest_4136 are separated by 292 nucleotides
Psest_4133: Psest_4133 - RNA polymerase sigma factor, sigma-70 family, at 4,314,111 to 4,315,352
_4133
Psest_4134: Psest_4134 - Uncharacterized protein conserved in bacteria, at 4,315,355 to 4,315,711
_4134
Psest_4135: Psest_4135 - Ketosteroid isomerase homolog, at 4,315,800 to 4,316,258
_4135
Psest_4136: Psest_4136 - TonB-dependent siderophore receptor, at 4,316,551 to 4,318,764
_4136
Position (kb)
4315
4316 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4314.397 kb on + strand, within Psest_4133 at 4314.398 kb on - strand, within Psest_4133 at 4314.577 kb on - strand, within Psest_4133 at 4314.757 kb on + strand, within Psest_4133 at 4314.758 kb on - strand, within Psest_4133 at 4314.758 kb on - strand, within Psest_4133 at 4314.758 kb on - strand, within Psest_4133 at 4314.758 kb on - strand, within Psest_4133 at 4314.778 kb on + strand, within Psest_4133 at 4314.778 kb on + strand, within Psest_4133 at 4314.778 kb on + strand, within Psest_4133 at 4314.779 kb on - strand, within Psest_4133 at 4314.779 kb on - strand, within Psest_4133 at 4314.779 kb on - strand, within Psest_4133 at 4314.779 kb on - strand, within Psest_4133 at 4314.882 kb on - strand, within Psest_4133 at 4315.183 kb on - strand, within Psest_4133 at 4315.306 kb on + strand at 4315.467 kb on + strand, within Psest_4134 at 4315.467 kb on + strand, within Psest_4134 at 4315.467 kb on + strand, within Psest_4134 at 4315.468 kb on - strand, within Psest_4134 at 4315.468 kb on - strand, within Psest_4134 at 4315.687 kb on - strand at 4315.687 kb on - strand at 4315.689 kb on + strand at 4315.689 kb on + strand at 4315.689 kb on + strand at 4315.689 kb on + strand at 4315.689 kb on + strand at 4315.689 kb on + strand at 4315.690 kb on - strand at 4315.690 kb on - strand at 4315.690 kb on - strand at 4315.690 kb on - strand at 4315.690 kb on - strand at 4315.690 kb on - strand at 4315.704 kb on + strand at 4315.704 kb on + strand at 4315.704 kb on + strand at 4315.705 kb on - strand at 4315.705 kb on - strand at 4315.705 kb on - strand at 4315.705 kb on - strand at 4315.746 kb on + strand at 4315.747 kb on - strand at 4315.856 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.142 kb on + strand, within Psest_4135 at 4316.143 kb on - strand, within Psest_4135 at 4316.143 kb on - strand, within Psest_4135 at 4316.143 kb on - strand, within Psest_4135 at 4316.143 kb on - strand, within Psest_4135 at 4316.299 kb on + strand at 4316.299 kb on + strand at 4316.299 kb on + strand at 4316.299 kb on + strand at 4316.299 kb on + strand at 4316.300 kb on - strand at 4316.433 kb on + strand at 4316.574 kb on + strand at 4316.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 4,314,397 + Psest_4133 0.23 +0.2 4,314,398 - Psest_4133 0.23 -2.0 4,314,577 - Psest_4133 0.38 -1.2 4,314,757 + Psest_4133 0.52 +0.9 4,314,758 - Psest_4133 0.52 -0.9 4,314,758 - Psest_4133 0.52 +0.8 4,314,758 - Psest_4133 0.52 +0.3 4,314,758 - Psest_4133 0.52 +1.7 4,314,778 + Psest_4133 0.54 +1.3 4,314,778 + Psest_4133 0.54 -0.8 4,314,778 + Psest_4133 0.54 +1.7 4,314,779 - Psest_4133 0.54 -2.6 4,314,779 - Psest_4133 0.54 -0.0 4,314,779 - Psest_4133 0.54 +0.5 4,314,779 - Psest_4133 0.54 -1.1 4,314,882 - Psest_4133 0.62 +1.7 4,315,183 - Psest_4133 0.86 +0.3 4,315,306 + +0.6 4,315,467 + Psest_4134 0.31 -0.4 4,315,467 + Psest_4134 0.31 +2.5 4,315,467 + Psest_4134 0.31 -2.1 4,315,468 - Psest_4134 0.32 -0.7 4,315,468 - Psest_4134 0.32 -1.5 4,315,687 - +0.3 4,315,687 - +2.3 4,315,689 + +1.6 4,315,689 + +0.2 4,315,689 + -1.2 4,315,689 + +0.6 4,315,689 + -1.5 4,315,689 + -1.3 4,315,690 - -1.4 4,315,690 - +2.9 4,315,690 - +1.3 4,315,690 - +0.4 4,315,690 - +0.7 4,315,690 - +0.1 4,315,704 + -0.1 4,315,704 + -1.8 4,315,704 + +0.4 4,315,705 - -0.1 4,315,705 - +0.7 4,315,705 - +0.8 4,315,705 - -1.9 4,315,746 + +0.9 4,315,747 - -0.5 4,315,856 + Psest_4135 0.12 +0.0 4,316,142 + Psest_4135 0.75 -0.2 4,316,142 + Psest_4135 0.75 +0.9 4,316,142 + Psest_4135 0.75 -0.4 4,316,142 + Psest_4135 0.75 -0.4 4,316,142 + Psest_4135 0.75 -0.4 4,316,142 + Psest_4135 0.75 -0.7 4,316,142 + Psest_4135 0.75 -0.4 4,316,142 + Psest_4135 0.75 +0.3 4,316,142 + Psest_4135 0.75 -0.3 4,316,143 - Psest_4135 0.75 +0.7 4,316,143 - Psest_4135 0.75 +1.1 4,316,143 - Psest_4135 0.75 +2.3 4,316,143 - Psest_4135 0.75 -0.8 4,316,299 + +1.7 4,316,299 + -0.7 4,316,299 + +0.2 4,316,299 + +2.9 4,316,299 + +0.3 4,316,300 - +1.9 4,316,433 + +0.1 4,316,574 + -1.5 4,316,574 + -0.0
Or see this region's nucleotide sequence