Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3996

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3995 and Psest_3996 are separated by 225 nucleotidesPsest_3996 and Psest_3997 are separated by 2 nucleotidesPsest_3997 and Psest_3998 are separated by 110 nucleotides Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985 _3995 Psest_3996: Psest_3996 - Transcriptional accessory protein, at 4,165,211 to 4,167,544 _3996 Psest_3997: Psest_3997 - uncharacterized domain 1, at 4,167,547 to 4,167,936 _3997 Psest_3998: Psest_3998 - glutamate--cysteine ligase, at 4,168,047 to 4,169,624 _3998 Position (kb) 4165 4166 4167 4168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4164.279 kb on + strandat 4164.367 kb on + strand, within Psest_3995at 4164.541 kb on - strand, within Psest_3995at 4164.664 kb on - strand, within Psest_3995at 4165.015 kb on - strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.152 kb on - strandat 4165.152 kb on - strandat 4165.204 kb on + strandat 4165.204 kb on + strandat 4165.204 kb on + strandat 4165.205 kb on - strandat 4165.205 kb on - strandat 4165.205 kb on - strandat 4165.514 kb on + strand, within Psest_3996at 4165.514 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.826 kb on + strand, within Psest_3996at 4166.060 kb on + strand, within Psest_3996at 4166.060 kb on + strand, within Psest_3996at 4166.471 kb on + strand, within Psest_3996at 4166.471 kb on + strand, within Psest_3996at 4166.517 kb on + strand, within Psest_3996at 4166.518 kb on - strand, within Psest_3996at 4166.518 kb on - strand, within Psest_3996at 4166.518 kb on - strand, within Psest_3996at 4166.518 kb on - strand, within Psest_3996at 4166.518 kb on - strand, within Psest_3996at 4166.701 kb on + strand, within Psest_3996at 4166.702 kb on - strand, within Psest_3996at 4166.921 kb on + strand, within Psest_3996at 4166.922 kb on - strand, within Psest_3996at 4167.004 kb on - strand, within Psest_3996at 4167.542 kb on + strandat 4167.542 kb on + strandat 4167.542 kb on + strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.543 kb on - strandat 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.793 kb on + strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.794 kb on - strand, within Psest_3997at 4167.881 kb on + strand, within Psest_3997at 4167.881 kb on + strand, within Psest_3997at 4167.881 kb on + strand, within Psest_3997at 4167.881 kb on + strand, within Psest_3997at 4167.882 kb on - strand, within Psest_3997at 4167.882 kb on - strand, within Psest_3997at 4167.882 kb on - strand, within Psest_3997at 4168.323 kb on + strand, within Psest_3998at 4168.323 kb on + strand, within Psest_3998at 4168.324 kb on - strand, within Psest_3998at 4168.444 kb on - strand, within Psest_3998at 4168.503 kb on + strand, within Psest_3998at 4168.503 kb on + strand, within Psest_3998

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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4,164,279 + +1.9
4,164,367 + Psest_3995 0.16 -0.1
4,164,541 - Psest_3995 0.39 -2.0
4,164,664 - Psest_3995 0.56 -0.6
4,165,015 - +0.8
4,165,151 + +0.9
4,165,151 + +0.0
4,165,151 + -0.1
4,165,152 - +1.8
4,165,152 - -0.1
4,165,204 + +0.3
4,165,204 + -0.1
4,165,204 + +1.3
4,165,205 - +0.9
4,165,205 - +0.9
4,165,205 - +1.6
4,165,514 + Psest_3996 0.13 -1.4
4,165,514 + Psest_3996 0.13 -2.2
4,165,523 + Psest_3996 0.13 +0.5
4,165,523 + Psest_3996 0.13 -1.7
4,165,523 + Psest_3996 0.13 -1.1
4,165,524 - Psest_3996 0.13 -0.3
4,165,524 - Psest_3996 0.13 -1.1
4,165,524 - Psest_3996 0.13 -0.2
4,165,524 - Psest_3996 0.13 -2.6
4,165,524 - Psest_3996 0.13 -1.2
4,165,525 + Psest_3996 0.13 -2.0
4,165,525 + Psest_3996 0.13 +1.5
4,165,525 + Psest_3996 0.13 +1.1
4,165,525 + Psest_3996 0.13 -1.2
4,165,526 - Psest_3996 0.13 -0.7
4,165,526 - Psest_3996 0.13 -0.1
4,165,526 - Psest_3996 0.13 +2.2
4,165,526 - Psest_3996 0.13 +0.1
4,165,526 - Psest_3996 0.13 -0.2
4,165,526 - Psest_3996 0.13 +0.8
4,165,526 - Psest_3996 0.13 -2.5
4,165,694 + Psest_3996 0.21 +1.7
4,165,694 + Psest_3996 0.21 -0.2
4,165,694 + Psest_3996 0.21 +0.0
4,165,694 + Psest_3996 0.21 +2.9
4,165,694 + Psest_3996 0.21 -0.9
4,165,694 + Psest_3996 0.21 -1.1
4,165,694 + Psest_3996 0.21 +0.3
4,165,694 + Psest_3996 0.21 +0.3
4,165,694 + Psest_3996 0.21 -0.7
4,165,694 + Psest_3996 0.21 +0.8
4,165,694 + Psest_3996 0.21 -0.1
4,165,695 - Psest_3996 0.21 -2.4
4,165,695 - Psest_3996 0.21 +0.2
4,165,695 - Psest_3996 0.21 +1.9
4,165,695 - Psest_3996 0.21 +0.9
4,165,695 - Psest_3996 0.21 -1.4
4,165,695 - Psest_3996 0.21 -2.4
4,165,695 - Psest_3996 0.21 +0.6
4,165,695 - Psest_3996 0.21 +0.3
4,165,695 - Psest_3996 0.21 +1.1
4,165,695 - Psest_3996 0.21 +0.9
4,165,695 - Psest_3996 0.21 +0.1
4,165,695 - Psest_3996 0.21 +1.7
4,165,826 + Psest_3996 0.26 -0.9
4,166,060 + Psest_3996 0.36 -0.6
4,166,060 + Psest_3996 0.36 +0.0
4,166,471 + Psest_3996 0.54 -1.7
4,166,471 + Psest_3996 0.54 -0.9
4,166,517 + Psest_3996 0.56 -1.5
4,166,518 - Psest_3996 0.56 -0.7
4,166,518 - Psest_3996 0.56 -1.5
4,166,518 - Psest_3996 0.56 +1.9
4,166,518 - Psest_3996 0.56 -0.2
4,166,518 - Psest_3996 0.56 -0.4
4,166,701 + Psest_3996 0.64 +0.6
4,166,702 - Psest_3996 0.64 +0.9
4,166,921 + Psest_3996 0.73 +0.6
4,166,922 - Psest_3996 0.73 +2.2
4,167,004 - Psest_3996 0.77 +2.3
4,167,542 + -0.4
4,167,542 + +2.9
4,167,542 + +2.2
4,167,543 - +1.3
4,167,543 - +0.0
4,167,543 - +0.1
4,167,543 - -0.7
4,167,543 - -0.1
4,167,543 - -1.8
4,167,543 - -1.4
4,167,543 - -1.4
4,167,543 - -0.7
4,167,543 - +0.2
4,167,543 - +0.4
4,167,543 - +0.3
4,167,543 - +0.6
4,167,543 - -0.7
4,167,543 - -1.1
4,167,543 - -1.1
4,167,543 - -2.4
4,167,793 + Psest_3997 0.63 -2.5
4,167,793 + Psest_3997 0.63 -1.1
4,167,793 + Psest_3997 0.63 -0.7
4,167,793 + Psest_3997 0.63 +1.9
4,167,793 + Psest_3997 0.63 -0.5
4,167,793 + Psest_3997 0.63 -0.4
4,167,793 + Psest_3997 0.63 -1.2
4,167,794 - Psest_3997 0.63 -0.9
4,167,794 - Psest_3997 0.63 -0.9
4,167,794 - Psest_3997 0.63 -1.9
4,167,794 - Psest_3997 0.63 -0.3
4,167,794 - Psest_3997 0.63 -0.9
4,167,794 - Psest_3997 0.63 +1.5
4,167,794 - Psest_3997 0.63 -1.1
4,167,794 - Psest_3997 0.63 +0.0
4,167,794 - Psest_3997 0.63 -1.7
4,167,794 - Psest_3997 0.63 +0.2
4,167,794 - Psest_3997 0.63 +4.2
4,167,794 - Psest_3997 0.63 +0.3
4,167,794 - Psest_3997 0.63 -0.1
4,167,794 - Psest_3997 0.63 -1.4
4,167,794 - Psest_3997 0.63 -1.3
4,167,794 - Psest_3997 0.63 +0.6
4,167,881 + Psest_3997 0.86 +0.7
4,167,881 + Psest_3997 0.86 +1.3
4,167,881 + Psest_3997 0.86 +0.2
4,167,881 + Psest_3997 0.86 +0.1
4,167,882 - Psest_3997 0.86 -0.1
4,167,882 - Psest_3997 0.86 +1.9
4,167,882 - Psest_3997 0.86 -1.1
4,168,323 + Psest_3998 0.17 -1.2
4,168,323 + Psest_3998 0.17 -2.8
4,168,324 - Psest_3998 0.18 -0.4
4,168,444 - Psest_3998 0.25 +0.9
4,168,503 + Psest_3998 0.29 -0.1
4,168,503 + Psest_3998 0.29 -1.1

Or see this region's nucleotide sequence