Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3884 and Psest_3885 are separated by 76 nucleotides Psest_3885 and Psest_3886 are separated by 12 nucleotides
Psest_3884: Psest_3884 - Signal transduction histidine kinase, at 4,053,878 to 4,055,275
_3884
Psest_3885: Psest_3885 - conserved hypothetical protein, steroid delta-isomerase-related, at 4,055,352 to 4,055,795
_3885
Psest_3886: Psest_3886 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 4,055,808 to 4,057,457
_3886
Position (kb)
4055
4056 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4055.310 kb on + strand at 4055.310 kb on + strand at 4055.311 kb on - strand at 4055.311 kb on - strand at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.977 kb on + strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.978 kb on - strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.979 kb on + strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4055.980 kb on - strand, within Psest_3886 at 4056.356 kb on - strand, within Psest_3886 at 4056.474 kb on + strand, within Psest_3886 at 4056.474 kb on + strand, within Psest_3886 at 4056.475 kb on - strand, within Psest_3886 at 4056.516 kb on + strand, within Psest_3886 at 4056.517 kb on - strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.658 kb on + strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886 at 4056.659 kb on - strand, within Psest_3886
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 4,055,310 + -0.7 4,055,310 + -2.8 4,055,311 - +0.2 4,055,311 - -0.1 4,055,977 + Psest_3886 0.10 -0.6 4,055,977 + Psest_3886 0.10 +0.9 4,055,977 + Psest_3886 0.10 +0.6 4,055,977 + Psest_3886 0.10 -0.3 4,055,977 + Psest_3886 0.10 +4.3 4,055,977 + Psest_3886 0.10 -1.0 4,055,977 + Psest_3886 0.10 +1.5 4,055,977 + Psest_3886 0.10 -1.7 4,055,977 + Psest_3886 0.10 -1.3 4,055,977 + Psest_3886 0.10 -0.1 4,055,977 + Psest_3886 0.10 -0.0 4,055,977 + Psest_3886 0.10 +0.6 4,055,977 + Psest_3886 0.10 -1.3 4,055,977 + Psest_3886 0.10 +0.7 4,055,977 + Psest_3886 0.10 +1.3 4,055,977 + Psest_3886 0.10 +0.4 4,055,978 - Psest_3886 0.10 +4.3 4,055,978 - Psest_3886 0.10 -1.2 4,055,978 - Psest_3886 0.10 +2.7 4,055,978 - Psest_3886 0.10 -1.4 4,055,978 - Psest_3886 0.10 +3.3 4,055,978 - Psest_3886 0.10 +2.0 4,055,978 - Psest_3886 0.10 +1.0 4,055,978 - Psest_3886 0.10 +1.7 4,055,978 - Psest_3886 0.10 +1.0 4,055,978 - Psest_3886 0.10 +0.8 4,055,978 - Psest_3886 0.10 -0.0 4,055,978 - Psest_3886 0.10 -1.2 4,055,978 - Psest_3886 0.10 -0.3 4,055,978 - Psest_3886 0.10 +1.3 4,055,978 - Psest_3886 0.10 +0.2 4,055,978 - Psest_3886 0.10 +0.6 4,055,978 - Psest_3886 0.10 +1.5 4,055,978 - Psest_3886 0.10 -0.0 4,055,978 - Psest_3886 0.10 +0.4 4,055,978 - Psest_3886 0.10 -1.3 4,055,978 - Psest_3886 0.10 +0.8 4,055,978 - Psest_3886 0.10 +1.0 4,055,978 - Psest_3886 0.10 +0.1 4,055,978 - Psest_3886 0.10 +2.0 4,055,978 - Psest_3886 0.10 -1.6 4,055,978 - Psest_3886 0.10 -0.7 4,055,979 + Psest_3886 0.10 -1.2 4,055,979 + Psest_3886 0.10 -0.6 4,055,979 + Psest_3886 0.10 +1.2 4,055,979 + Psest_3886 0.10 +1.3 4,055,979 + Psest_3886 0.10 +3.0 4,055,979 + Psest_3886 0.10 +1.6 4,055,980 - Psest_3886 0.10 +0.7 4,055,980 - Psest_3886 0.10 -0.8 4,055,980 - Psest_3886 0.10 +0.9 4,056,356 - Psest_3886 0.33 -0.8 4,056,474 + Psest_3886 0.40 +0.4 4,056,474 + Psest_3886 0.40 +1.4 4,056,475 - Psest_3886 0.40 -0.3 4,056,516 + Psest_3886 0.43 +0.4 4,056,517 - Psest_3886 0.43 -0.3 4,056,658 + Psest_3886 0.52 +0.4 4,056,658 + Psest_3886 0.52 +0.4 4,056,658 + Psest_3886 0.52 +0.4 4,056,659 - Psest_3886 0.52 +1.1 4,056,659 - Psest_3886 0.52 +1.3 4,056,659 - Psest_3886 0.52 -0.3 4,056,659 - Psest_3886 0.52 -0.0 4,056,659 - Psest_3886 0.52 +1.0 4,056,659 - Psest_3886 0.52 +0.4
Or see this region's nucleotide sequence