Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3872 and Psest_3873 are separated by 169 nucleotides Psest_3873 and Psest_3874 are separated by 78 nucleotides Psest_3874 and Psest_3875 are separated by 152 nucleotides
Psest_3872: Psest_3872 - FAD/FMN-containing dehydrogenases, at 4,042,806 to 4,044,224
_3872
Psest_3873: Psest_3873 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 4,044,394 to 4,045,629
_3873
Psest_3874: Psest_3874 - hypothetical protein, at 4,045,708 to 4,046,001
_3874
Psest_3875: Psest_3875 - hypothetical protein, at 4,046,154 to 4,046,531
_3875
Position (kb)
4044
4045
4046 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4043.923 kb on + strand, within Psest_3872 at 4043.923 kb on + strand, within Psest_3872 at 4043.923 kb on + strand, within Psest_3872 at 4043.924 kb on - strand, within Psest_3872 at 4043.924 kb on - strand, within Psest_3872 at 4044.115 kb on + strand at 4044.215 kb on + strand at 4044.215 kb on + strand at 4044.215 kb on + strand at 4044.215 kb on + strand at 4044.277 kb on + strand at 4044.277 kb on + strand at 4044.277 kb on + strand at 4044.277 kb on + strand at 4044.278 kb on - strand at 4044.278 kb on - strand at 4044.278 kb on - strand at 4044.278 kb on - strand at 4044.278 kb on - strand at 4044.282 kb on + strand at 4044.287 kb on + strand at 4044.287 kb on + strand at 4044.384 kb on + strand at 4045.534 kb on + strand at 4045.561 kb on + strand at 4046.039 kb on - strand at 4046.158 kb on + strand at 4046.159 kb on - strand at 4046.159 kb on - strand at 4046.523 kb on + strand at 4046.523 kb on + strand at 4046.524 kb on - strand at 4046.524 kb on - strand at 4046.546 kb on + strand at 4046.547 kb on - strand at 4046.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 4,043,923 + Psest_3872 0.79 -0.3 4,043,923 + Psest_3872 0.79 -0.1 4,043,923 + Psest_3872 0.79 +0.3 4,043,924 - Psest_3872 0.79 +0.4 4,043,924 - Psest_3872 0.79 +0.6 4,044,115 + -0.0 4,044,215 + -2.2 4,044,215 + -0.6 4,044,215 + -0.1 4,044,215 + -1.8 4,044,277 + -0.3 4,044,277 + +1.0 4,044,277 + +0.0 4,044,277 + -1.7 4,044,278 - -0.4 4,044,278 - -1.0 4,044,278 - -3.6 4,044,278 - -2.0 4,044,278 - +2.0 4,044,282 + -0.3 4,044,287 + -1.6 4,044,287 + -0.3 4,044,384 + -0.4 4,045,534 + -1.1 4,045,561 + -1.6 4,046,039 - -0.9 4,046,158 + +0.1 4,046,159 - +0.2 4,046,159 - -0.4 4,046,523 + -1.7 4,046,523 + -1.3 4,046,524 - +1.3 4,046,524 - -0.3 4,046,546 + -0.6 4,046,547 - -1.4 4,046,547 - -1.0
Or see this region's nucleotide sequence