Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3873

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3872 and Psest_3873 are separated by 169 nucleotidesPsest_3873 and Psest_3874 are separated by 78 nucleotidesPsest_3874 and Psest_3875 are separated by 152 nucleotides Psest_3872: Psest_3872 - FAD/FMN-containing dehydrogenases, at 4,042,806 to 4,044,224 _3872 Psest_3873: Psest_3873 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 4,044,394 to 4,045,629 _3873 Psest_3874: Psest_3874 - hypothetical protein, at 4,045,708 to 4,046,001 _3874 Psest_3875: Psest_3875 - hypothetical protein, at 4,046,154 to 4,046,531 _3875 Position (kb) 4044 4045 4046Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4043.923 kb on + strand, within Psest_3872at 4043.923 kb on + strand, within Psest_3872at 4043.923 kb on + strand, within Psest_3872at 4043.924 kb on - strand, within Psest_3872at 4043.924 kb on - strand, within Psest_3872at 4044.115 kb on + strandat 4044.215 kb on + strandat 4044.215 kb on + strandat 4044.215 kb on + strandat 4044.215 kb on + strandat 4044.277 kb on + strandat 4044.277 kb on + strandat 4044.277 kb on + strandat 4044.277 kb on + strandat 4044.278 kb on - strandat 4044.278 kb on - strandat 4044.278 kb on - strandat 4044.278 kb on - strandat 4044.278 kb on - strandat 4044.282 kb on + strandat 4044.287 kb on + strandat 4044.287 kb on + strandat 4044.384 kb on + strandat 4045.534 kb on + strandat 4045.561 kb on + strandat 4046.039 kb on - strandat 4046.158 kb on + strandat 4046.159 kb on - strandat 4046.159 kb on - strandat 4046.523 kb on + strandat 4046.523 kb on + strandat 4046.524 kb on - strandat 4046.524 kb on - strandat 4046.546 kb on + strandat 4046.547 kb on - strandat 4046.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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4,043,923 + Psest_3872 0.79 -0.3
4,043,923 + Psest_3872 0.79 -0.1
4,043,923 + Psest_3872 0.79 +0.3
4,043,924 - Psest_3872 0.79 +0.4
4,043,924 - Psest_3872 0.79 +0.6
4,044,115 + -0.0
4,044,215 + -2.2
4,044,215 + -0.6
4,044,215 + -0.1
4,044,215 + -1.8
4,044,277 + -0.3
4,044,277 + +1.0
4,044,277 + +0.0
4,044,277 + -1.7
4,044,278 - -0.4
4,044,278 - -1.0
4,044,278 - -3.6
4,044,278 - -2.0
4,044,278 - +2.0
4,044,282 + -0.3
4,044,287 + -1.6
4,044,287 + -0.3
4,044,384 + -0.4
4,045,534 + -1.1
4,045,561 + -1.6
4,046,039 - -0.9
4,046,158 + +0.1
4,046,159 - +0.2
4,046,159 - -0.4
4,046,523 + -1.7
4,046,523 + -1.3
4,046,524 - +1.3
4,046,524 - -0.3
4,046,546 + -0.6
4,046,547 - -1.4
4,046,547 - -1.0

Or see this region's nucleotide sequence