Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3821 and Psest_3822 are separated by 43 nucleotides Psest_3822 and Psest_3823 are separated by 111 nucleotides
Psest_3821: Psest_3821 - ATP-dependent Zn proteases, at 3,990,566 to 3,992,539
_3821
Psest_3822: Psest_3822 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,992,583 to 3,993,659
_3822
Psest_3823: Psest_3823 - hypothetical protein, at 3,993,771 to 3,995,048
_3823
Position (kb)
3992
3993
3994 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3991.635 kb on - strand, within Psest_3821 at 3991.721 kb on + strand, within Psest_3821 at 3991.721 kb on + strand, within Psest_3821 at 3991.722 kb on - strand, within Psest_3821 at 3991.722 kb on - strand, within Psest_3821 at 3991.722 kb on - strand, within Psest_3821 at 3991.875 kb on + strand, within Psest_3821 at 3992.009 kb on + strand, within Psest_3821 at 3992.009 kb on + strand, within Psest_3821 at 3992.009 kb on + strand, within Psest_3821 at 3992.009 kb on + strand, within Psest_3821 at 3992.009 kb on + strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.010 kb on - strand, within Psest_3821 at 3992.069 kb on + strand, within Psest_3821 at 3992.069 kb on + strand, within Psest_3821 at 3992.069 kb on + strand, within Psest_3821 at 3992.069 kb on + strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.070 kb on - strand, within Psest_3821 at 3992.804 kb on + strand, within Psest_3822 at 3992.804 kb on + strand, within Psest_3822 at 3992.805 kb on - strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.812 kb on + strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.813 kb on - strand, within Psest_3822 at 3992.917 kb on + strand, within Psest_3822 at 3993.454 kb on + strand, within Psest_3822 at 3993.454 kb on + strand, within Psest_3822 at 3993.454 kb on + strand, within Psest_3822 at 3993.455 kb on - strand, within Psest_3822 at 3993.455 kb on - strand, within Psest_3822 at 3993.455 kb on - strand, within Psest_3822 at 3993.593 kb on + strand at 3993.720 kb on + strand at 3993.720 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.764 kb on + strand at 3993.765 kb on - strand at 3993.765 kb on - strand at 3993.765 kb on - strand at 3993.765 kb on - strand at 3993.765 kb on - strand at 3993.765 kb on - strand at 3993.946 kb on - strand, within Psest_3823 at 3993.993 kb on + strand, within Psest_3823
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 3,991,635 - Psest_3821 0.54 +2.6 3,991,721 + Psest_3821 0.59 +2.4 3,991,721 + Psest_3821 0.59 -0.3 3,991,722 - Psest_3821 0.59 +2.0 3,991,722 - Psest_3821 0.59 -1.8 3,991,722 - Psest_3821 0.59 +0.7 3,991,875 + Psest_3821 0.66 +2.0 3,992,009 + Psest_3821 0.73 +0.5 3,992,009 + Psest_3821 0.73 +1.0 3,992,009 + Psest_3821 0.73 +0.6 3,992,009 + Psest_3821 0.73 +2.0 3,992,009 + Psest_3821 0.73 +0.5 3,992,010 - Psest_3821 0.73 +0.4 3,992,010 - Psest_3821 0.73 +0.0 3,992,010 - Psest_3821 0.73 -0.5 3,992,010 - Psest_3821 0.73 +1.3 3,992,010 - Psest_3821 0.73 +0.7 3,992,010 - Psest_3821 0.73 +1.0 3,992,069 + Psest_3821 0.76 +0.8 3,992,069 + Psest_3821 0.76 +0.0 3,992,069 + Psest_3821 0.76 +1.8 3,992,069 + Psest_3821 0.76 +0.7 3,992,070 - Psest_3821 0.76 +0.5 3,992,070 - Psest_3821 0.76 +1.0 3,992,070 - Psest_3821 0.76 +0.5 3,992,070 - Psest_3821 0.76 -0.4 3,992,070 - Psest_3821 0.76 +1.0 3,992,070 - Psest_3821 0.76 +0.5 3,992,070 - Psest_3821 0.76 +1.5 3,992,804 + Psest_3822 0.21 +0.6 3,992,804 + Psest_3822 0.21 +0.0 3,992,805 - Psest_3822 0.21 +3.0 3,992,812 + Psest_3822 0.21 +0.6 3,992,812 + Psest_3822 0.21 +0.2 3,992,812 + Psest_3822 0.21 -0.5 3,992,812 + Psest_3822 0.21 -0.8 3,992,812 + Psest_3822 0.21 +1.5 3,992,812 + Psest_3822 0.21 +0.5 3,992,813 - Psest_3822 0.21 -1.7 3,992,813 - Psest_3822 0.21 +1.0 3,992,813 - Psest_3822 0.21 +1.3 3,992,813 - Psest_3822 0.21 +1.0 3,992,813 - Psest_3822 0.21 +0.0 3,992,813 - Psest_3822 0.21 +2.0 3,992,813 - Psest_3822 0.21 +1.0 3,992,813 - Psest_3822 0.21 +4.4 3,992,813 - Psest_3822 0.21 +1.0 3,992,813 - Psest_3822 0.21 +2.0 3,992,813 - Psest_3822 0.21 +0.5 3,992,813 - Psest_3822 0.21 +1.6 3,992,917 + Psest_3822 0.31 +1.0 3,993,454 + Psest_3822 0.81 +1.3 3,993,454 + Psest_3822 0.81 +1.0 3,993,454 + Psest_3822 0.81 +1.0 3,993,455 - Psest_3822 0.81 +2.0 3,993,455 - Psest_3822 0.81 -0.8 3,993,455 - Psest_3822 0.81 +0.7 3,993,593 + +0.7 3,993,720 + +1.5 3,993,720 + +2.0 3,993,764 + -0.3 3,993,764 + +3.6 3,993,764 + +1.5 3,993,764 + -0.5 3,993,764 + +1.0 3,993,764 + +1.0 3,993,764 + -1.3 3,993,764 + -0.3 3,993,764 + -0.4 3,993,764 + +1.0 3,993,764 + +3.6 3,993,764 + -0.3 3,993,765 - +0.0 3,993,765 - +0.7 3,993,765 - +2.6 3,993,765 - +0.8 3,993,765 - +0.0 3,993,765 - -1.1 3,993,946 - Psest_3823 0.14 +0.4 3,993,993 + Psest_3823 0.17 +0.4
Or see this region's nucleotide sequence