Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3677

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3675 and Psest_3676 are separated by 6 nucleotidesPsest_3676 and Psest_3677 overlap by 10 nucleotidesPsest_3677 and Psest_3678 are separated by 75 nucleotidesPsest_3678 and Psest_3679 are separated by 14 nucleotides Psest_3675: Psest_3675 - tRNA nucleotidyltransferase/poly(A) polymerase, at 3,840,178 to 3,841,347 _3675 Psest_3676: Psest_3676 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 3,841,354 to 3,841,896 _3676 Psest_3677: Psest_3677 - dihydroneopterin aldolase, at 3,841,887 to 3,842,240 _3677 Psest_3678: Psest_3678 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,842,316 to 3,842,885 _3678 Psest_3679: Psest_3679 - putative glycoprotease GCP, at 3,842,900 to 3,843,925 _3679 Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -2 -1 0 1 2at 3841.325 kb on - strandat 3841.325 kb on - strandat 3841.325 kb on - strandat 3841.345 kb on + strandat 3841.345 kb on + strandat 3841.345 kb on + strandat 3841.346 kb on - strandat 3841.346 kb on - strandat 3841.346 kb on - strandat 3841.346 kb on - strandat 3841.346 kb on - strandat 3841.465 kb on + strand, within Psest_3676at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.516 kb on - strand, within Psest_3678at 3842.601 kb on + strand, within Psest_3678at 3842.602 kb on - strand, within Psest_3678at 3842.822 kb on + strand, within Psest_3678at 3842.822 kb on + strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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3,841,325 - +0.2
3,841,325 - +0.1
3,841,325 - +0.0
3,841,345 + +0.5
3,841,345 + +0.1
3,841,345 + -0.8
3,841,346 - +0.1
3,841,346 - -0.4
3,841,346 - -2.2
3,841,346 - -0.3
3,841,346 - +2.5
3,841,465 + Psest_3676 0.20 +2.1
3,842,441 + Psest_3678 0.22 +1.4
3,842,441 + Psest_3678 0.22 +1.6
3,842,441 + Psest_3678 0.22 -0.3
3,842,441 + Psest_3678 0.22 +1.9
3,842,441 + Psest_3678 0.22 -1.0
3,842,441 + Psest_3678 0.22 +1.0
3,842,516 - Psest_3678 0.35 +1.1
3,842,601 + Psest_3678 0.50 +2.1
3,842,602 - Psest_3678 0.50 -0.2
3,842,822 + Psest_3678 0.89 -0.3
3,842,822 + Psest_3678 0.89 -0.3
3,842,823 - Psest_3678 0.89 -1.5
3,842,823 - Psest_3678 0.89 -0.3
3,842,823 - Psest_3678 0.89 -0.4

Or see this region's nucleotide sequence