Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0276 and Psest_0277 are separated by 65 nucleotides Psest_0277 and Psest_0278 overlap by 4 nucleotides Psest_0278 and Psest_0279 are separated by 26 nucleotides
Psest_0276: Psest_0276 - putative oxygen-independent coproporphyrinogen III oxidase, at 291,796 to 292,929
_0276
Psest_0277: Psest_0277 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 292,995 to 293,588
_0277
Psest_0278: Psest_0278 - hypothetical protein, at 293,585 to 294,007
_0278
Psest_0279: Psest_0279 - methionine biosynthesis protein MetW, at 294,034 to 294,633
_0279
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 292.067 kb on + strand, within Psest_0276 at 292.106 kb on + strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.229 kb on + strand, within Psest_0276 at 292.230 kb on - strand, within Psest_0276 at 292.598 kb on + strand, within Psest_0276 at 292.820 kb on + strand at 292.821 kb on - strand at 292.821 kb on - strand at 292.907 kb on + strand at 292.907 kb on + strand at 292.908 kb on - strand at 292.956 kb on + strand at 292.957 kb on - strand at 292.999 kb on - strand at 293.332 kb on + strand, within Psest_0277 at 293.332 kb on + strand, within Psest_0277 at 293.333 kb on - strand, within Psest_0277 at 293.649 kb on - strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.925 kb on + strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 294.007 kb on + strand at 294.007 kb on + strand at 294.007 kb on + strand at 294.008 kb on - strand at 294.008 kb on - strand at 294.013 kb on + strand at 294.059 kb on + strand at 294.060 kb on - strand at 294.218 kb on + strand, within Psest_0279 at 294.218 kb on + strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.219 kb on - strand, within Psest_0279 at 294.227 kb on + strand, within Psest_0279 at 294.227 kb on + strand, within Psest_0279 at 294.228 kb on - strand, within Psest_0279 at 294.228 kb on - strand, within Psest_0279
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 292,067 + Psest_0276 0.24 +0.9 292,106 + Psest_0276 0.27 +0.9 292,107 - Psest_0276 0.27 +1.4 292,107 - Psest_0276 0.27 -1.5 292,176 - Psest_0276 0.34 -0.1 292,176 - Psest_0276 0.34 -0.3 292,229 + Psest_0276 0.38 +0.8 292,230 - Psest_0276 0.38 -0.6 292,598 + Psest_0276 0.71 +1.2 292,820 + +0.6 292,821 - +0.5 292,821 - -1.3 292,907 + +2.4 292,907 + -0.9 292,908 - -1.9 292,956 + -0.9 292,957 - -2.3 292,999 - -0.9 293,332 + Psest_0277 0.57 -1.4 293,332 + Psest_0277 0.57 -1.7 293,333 - Psest_0277 0.57 -0.1 293,649 - Psest_0278 0.15 +0.3 293,703 + Psest_0278 0.28 +0.1 293,703 + Psest_0278 0.28 -2.3 293,704 - Psest_0278 0.28 +0.2 293,704 - Psest_0278 0.28 +1.4 293,704 - Psest_0278 0.28 -2.4 293,706 + Psest_0278 0.29 -0.4 293,706 + Psest_0278 0.29 +1.4 293,706 + Psest_0278 0.29 -0.9 293,706 + Psest_0278 0.29 +0.2 293,706 + Psest_0278 0.29 +0.6 293,707 - Psest_0278 0.29 -1.0 293,707 - Psest_0278 0.29 -2.0 293,707 - Psest_0278 0.29 -0.1 293,707 - Psest_0278 0.29 +0.8 293,707 - Psest_0278 0.29 -0.7 293,913 + Psest_0278 0.78 -0.7 293,913 + Psest_0278 0.78 -0.5 293,913 + Psest_0278 0.78 +0.3 293,913 + Psest_0278 0.78 -0.0 293,914 - Psest_0278 0.78 +1.0 293,914 - Psest_0278 0.78 -1.9 293,914 - Psest_0278 0.78 -0.7 293,914 - Psest_0278 0.78 -1.4 293,914 - Psest_0278 0.78 -2.9 293,914 - Psest_0278 0.78 -0.6 293,914 - Psest_0278 0.78 -0.9 293,914 - Psest_0278 0.78 -0.3 293,925 + Psest_0278 0.80 -1.3 293,926 - Psest_0278 0.81 -0.9 293,926 - Psest_0278 0.81 +0.4 293,926 - Psest_0278 0.81 -0.6 294,007 + +0.5 294,007 + +0.7 294,007 + -1.8 294,008 - +1.7 294,008 - -2.4 294,013 + +0.3 294,059 + -1.1 294,060 - -0.7 294,218 + Psest_0279 0.31 -1.1 294,218 + Psest_0279 0.31 -2.9 294,219 - Psest_0279 0.31 -3.4 294,219 - Psest_0279 0.31 -2.2 294,219 - Psest_0279 0.31 +0.3 294,219 - Psest_0279 0.31 -3.2 294,219 - Psest_0279 0.31 -3.3 294,219 - Psest_0279 0.31 -2.4 294,219 - Psest_0279 0.31 -2.9 294,227 + Psest_0279 0.32 -3.3 294,227 + Psest_0279 0.32 -1.1 294,228 - Psest_0279 0.32 -3.0 294,228 - Psest_0279 0.32 -1.1
Or see this region's nucleotide sequence