Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2633

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2632 and Psest_2633 are separated by 115 nucleotidesPsest_2633 and Psest_2634 are separated by 14 nucleotides Psest_2632: Psest_2632 - ribosomal protein S12 methylthiotransferase RimO, at 2,812,661 to 2,813,983 _2632 Psest_2633: Psest_2633 - choline dehydrogenase, at 2,814,099 to 2,815,772 _2633 Psest_2634: Psest_2634 - glycine betaine aldehyde dehydrogenase, at 2,815,787 to 2,817,259 _2634 Position (kb) 2814 2815 2816Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2813.110 kb on + strand, within Psest_2632at 2813.110 kb on + strand, within Psest_2632at 2813.110 kb on + strand, within Psest_2632at 2813.110 kb on + strand, within Psest_2632at 2813.110 kb on + strand, within Psest_2632at 2813.110 kb on + strand, within Psest_2632at 2813.111 kb on - strand, within Psest_2632at 2813.111 kb on - strand, within Psest_2632at 2813.111 kb on - strand, within Psest_2632at 2813.111 kb on - strand, within Psest_2632at 2813.267 kb on + strand, within Psest_2632at 2813.267 kb on + strand, within Psest_2632at 2813.268 kb on - strand, within Psest_2632at 2813.268 kb on - strand, within Psest_2632at 2813.268 kb on - strand, within Psest_2632at 2813.363 kb on + strand, within Psest_2632at 2813.364 kb on - strand, within Psest_2632at 2813.370 kb on - strand, within Psest_2632at 2813.606 kb on + strand, within Psest_2632at 2813.888 kb on + strandat 2813.889 kb on - strandat 2813.935 kb on - strandat 2814.142 kb on + strandat 2814.142 kb on + strandat 2814.142 kb on + strandat 2814.143 kb on - strandat 2814.143 kb on - strandat 2814.143 kb on - strandat 2814.145 kb on + strandat 2814.146 kb on - strandat 2814.146 kb on - strandat 2814.146 kb on - strandat 2814.212 kb on + strandat 2814.213 kb on - strandat 2814.535 kb on + strand, within Psest_2633at 2814.535 kb on + strand, within Psest_2633at 2814.535 kb on + strand, within Psest_2633at 2814.535 kb on + strand, within Psest_2633at 2814.535 kb on + strand, within Psest_2633at 2814.535 kb on + strand, within Psest_2633at 2814.536 kb on - strand, within Psest_2633at 2814.536 kb on - strand, within Psest_2633at 2814.664 kb on + strand, within Psest_2633at 2814.664 kb on + strand, within Psest_2633at 2814.860 kb on - strand, within Psest_2633at 2814.868 kb on + strand, within Psest_2633at 2814.868 kb on + strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2814.869 kb on - strand, within Psest_2633at 2815.039 kb on + strand, within Psest_2633at 2815.462 kb on + strand, within Psest_2633at 2815.486 kb on + strand, within Psest_2633at 2815.486 kb on + strand, within Psest_2633at 2815.486 kb on + strand, within Psest_2633at 2815.487 kb on - strand, within Psest_2633at 2815.487 kb on - strand, within Psest_2633at 2815.493 kb on + strand, within Psest_2633at 2815.493 kb on + strand, within Psest_2633at 2815.494 kb on - strand, within Psest_2633at 2815.582 kb on + strand, within Psest_2633at 2815.582 kb on + strand, within Psest_2633at 2815.582 kb on + strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.583 kb on - strand, within Psest_2633at 2815.595 kb on - strand, within Psest_2633at 2815.759 kb on + strandat 2815.759 kb on + strandat 2815.760 kb on - strandat 2815.760 kb on - strandat 2815.760 kb on - strandat 2815.760 kb on - strandat 2815.765 kb on + strandat 2815.765 kb on + strandat 2815.843 kb on - strandat 2815.843 kb on - strandat 2815.894 kb on - strandat 2815.933 kb on + strandat 2815.934 kb on - strandat 2815.934 kb on - strandat 2815.934 kb on - strandat 2816.241 kb on + strand, within Psest_2634at 2816.241 kb on + strand, within Psest_2634at 2816.241 kb on + strand, within Psest_2634at 2816.242 kb on - strand, within Psest_2634at 2816.242 kb on - strand, within Psest_2634at 2816.242 kb on - strand, within Psest_2634at 2816.242 kb on - strand, within Psest_2634at 2816.549 kb on + strand, within Psest_2634at 2816.549 kb on + strand, within Psest_2634at 2816.549 kb on + strand, within Psest_2634

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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2,813,110 + Psest_2632 0.34 +0.5
2,813,110 + Psest_2632 0.34 +2.1
2,813,110 + Psest_2632 0.34 +1.1
2,813,110 + Psest_2632 0.34 +1.1
2,813,110 + Psest_2632 0.34 +1.1
2,813,110 + Psest_2632 0.34 -0.8
2,813,111 - Psest_2632 0.34 -0.5
2,813,111 - Psest_2632 0.34 +2.1
2,813,111 - Psest_2632 0.34 +0.5
2,813,111 - Psest_2632 0.34 -1.9
2,813,267 + Psest_2632 0.46 +1.1
2,813,267 + Psest_2632 0.46 +1.7
2,813,268 - Psest_2632 0.46 +0.5
2,813,268 - Psest_2632 0.46 +2.1
2,813,268 - Psest_2632 0.46 +0.6
2,813,363 + Psest_2632 0.53 +0.1
2,813,364 - Psest_2632 0.53 -1.4
2,813,370 - Psest_2632 0.54 +2.1
2,813,606 + Psest_2632 0.71 +1.1
2,813,888 + -0.3
2,813,889 - -0.2
2,813,935 - +1.1
2,814,142 + +0.1
2,814,142 + -2.5
2,814,142 + +0.1
2,814,143 - +0.5
2,814,143 - +0.9
2,814,143 - +2.0
2,814,145 + -0.8
2,814,146 - +1.3
2,814,146 - +2.1
2,814,146 - +3.4
2,814,212 + +1.1
2,814,213 - -0.1
2,814,535 + Psest_2633 0.26 +0.1
2,814,535 + Psest_2633 0.26 -0.8
2,814,535 + Psest_2633 0.26 +3.1
2,814,535 + Psest_2633 0.26 +2.1
2,814,535 + Psest_2633 0.26 +0.1
2,814,535 + Psest_2633 0.26 +0.5
2,814,536 - Psest_2633 0.26 +1.1
2,814,536 - Psest_2633 0.26 +0.1
2,814,664 + Psest_2633 0.34 +0.5
2,814,664 + Psest_2633 0.34 +0.5
2,814,860 - Psest_2633 0.45 +0.1
2,814,868 + Psest_2633 0.46 +1.1
2,814,868 + Psest_2633 0.46 -0.9
2,814,869 - Psest_2633 0.46 -0.3
2,814,869 - Psest_2633 0.46 -0.2
2,814,869 - Psest_2633 0.46 +1.1
2,814,869 - Psest_2633 0.46 +0.5
2,814,869 - Psest_2633 0.46 -2.5
2,814,869 - Psest_2633 0.46 -0.3
2,814,869 - Psest_2633 0.46 -0.3
2,814,869 - Psest_2633 0.46 +0.1
2,815,039 + Psest_2633 0.56 -2.5
2,815,462 + Psest_2633 0.81 -0.6
2,815,486 + Psest_2633 0.83 +0.7
2,815,486 + Psest_2633 0.83 -1.1
2,815,486 + Psest_2633 0.83 -0.5
2,815,487 - Psest_2633 0.83 -0.1
2,815,487 - Psest_2633 0.83 +0.6
2,815,493 + Psest_2633 0.83 +0.5
2,815,493 + Psest_2633 0.83 -0.5
2,815,494 - Psest_2633 0.83 +2.1
2,815,582 + Psest_2633 0.89 +0.1
2,815,582 + Psest_2633 0.89 -0.5
2,815,582 + Psest_2633 0.89 +1.1
2,815,583 - Psest_2633 0.89 +0.5
2,815,583 - Psest_2633 0.89 -0.5
2,815,583 - Psest_2633 0.89 +0.5
2,815,583 - Psest_2633 0.89 +0.7
2,815,583 - Psest_2633 0.89 +0.9
2,815,583 - Psest_2633 0.89 -0.3
2,815,595 - Psest_2633 0.89 +2.1
2,815,759 + -1.2
2,815,759 + -0.5
2,815,760 - +0.1
2,815,760 - +4.1
2,815,760 - -1.1
2,815,760 - -0.9
2,815,765 + +0.6
2,815,765 + +0.1
2,815,843 - +0.5
2,815,843 - -0.3
2,815,894 - -0.5
2,815,933 + +3.5
2,815,934 - +1.1
2,815,934 - +0.1
2,815,934 - -0.3
2,816,241 + Psest_2634 0.31 -0.8
2,816,241 + Psest_2634 0.31 +2.1
2,816,241 + Psest_2634 0.31 -0.9
2,816,242 - Psest_2634 0.31 -0.8
2,816,242 - Psest_2634 0.31 +0.5
2,816,242 - Psest_2634 0.31 +0.5
2,816,242 - Psest_2634 0.31 -0.3
2,816,549 + Psest_2634 0.52 -0.3
2,816,549 + Psest_2634 0.52 -0.6
2,816,549 + Psest_2634 0.52 +1.1

Or see this region's nucleotide sequence