Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0243

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0242 and Psest_0243 overlap by 1 nucleotidesPsest_0243 and Psest_0244 are separated by 107 nucleotidesPsest_0244 and Psest_0245 are separated by 105 nucleotides Psest_0242: Psest_0242 - gamma-glutamyltranspeptidase, at 252,880 to 254,613 _0242 Psest_0243: Psest_0243 - hypothetical protein, at 254,613 to 254,864 _0243 Psest_0244: Psest_0244 - pantetheine-phosphate adenylyltransferase, bacterial, at 254,972 to 255,454 _0244 Psest_0245: Psest_0245 - Choline dehydrogenase and related flavoproteins, at 255,560 to 257,155 _0245 Position (kb) 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 253.838 kb on + strand, within Psest_0242at 253.838 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.638 kb on + strandat 254.638 kb on + strandat 254.639 kb on - strand, within Psest_0243at 254.639 kb on - strand, within Psest_0243at 254.906 kb on - strandat 254.906 kb on - strandat 254.909 kb on - strandat 254.909 kb on - strandat 255.615 kb on + strandat 255.671 kb on + strandat 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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253,838 + Psest_0242 0.55 -1.1
253,838 + Psest_0242 0.55 +0.8
253,891 + Psest_0242 0.58 +2.4
253,891 + Psest_0242 0.58 +1.8
253,891 + Psest_0242 0.58 -1.0
253,891 + Psest_0242 0.58 -0.9
253,892 - Psest_0242 0.58 -1.0
253,892 - Psest_0242 0.58 +2.1
253,892 - Psest_0242 0.58 +1.6
254,264 + Psest_0242 0.80 +0.2
254,264 + Psest_0242 0.80 -2.0
254,264 + Psest_0242 0.80 +0.2
254,264 + Psest_0242 0.80 -1.5
254,264 + Psest_0242 0.80 -1.9
254,264 + Psest_0242 0.80 +0.4
254,264 + Psest_0242 0.80 -1.3
254,264 + Psest_0242 0.80 -0.0
254,265 - Psest_0242 0.80 +2.2
254,265 - Psest_0242 0.80 +0.5
254,265 - Psest_0242 0.80 -1.2
254,265 - Psest_0242 0.80 +0.5
254,265 - Psest_0242 0.80 +0.8
254,265 - Psest_0242 0.80 +0.2
254,265 - Psest_0242 0.80 +0.8
254,265 - Psest_0242 0.80 +1.1
254,265 - Psest_0242 0.80 -0.7
254,265 - Psest_0242 0.80 -1.0
254,638 + -1.2
254,638 + -1.6
254,639 - Psest_0243 0.10 -2.2
254,639 - Psest_0243 0.10 +0.2
254,906 - -0.3
254,906 - -0.3
254,909 - -1.6
254,909 - -1.0
255,615 + +1.8
255,671 + +0.9
255,836 - Psest_0245 0.17 +0.8
255,836 - Psest_0245 0.17 +0.5
255,836 - Psest_0245 0.17 +0.8
255,836 - Psest_0245 0.17 -1.2
255,839 + Psest_0245 0.17 -0.7
255,839 + Psest_0245 0.17 -1.5
255,839 + Psest_0245 0.17 +2.6
255,839 + Psest_0245 0.17 -0.5
255,839 + Psest_0245 0.17 -2.3
255,839 + Psest_0245 0.17 -1.9
255,839 + Psest_0245 0.17 -0.2
255,839 + Psest_0245 0.17 -1.0
255,839 + Psest_0245 0.17 -0.6
255,839 + Psest_0245 0.17 +0.4
255,839 + Psest_0245 0.17 +0.4
255,839 + Psest_0245 0.17 +0.6
255,840 - Psest_0245 0.18 -1.7
255,840 - Psest_0245 0.18 -0.9
255,840 - Psest_0245 0.18 -0.1
255,840 - Psest_0245 0.18 -0.4
255,840 - Psest_0245 0.18 +1.7
255,840 - Psest_0245 0.18 +0.8
255,840 - Psest_0245 0.18 +0.8

Or see this region's nucleotide sequence