Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0229

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0228 and Psest_0229 are separated by 88 nucleotidesPsest_0229 and Psest_0230 are separated by 87 nucleotidesPsest_0230 and Psest_0231 overlap by 8 nucleotides Psest_0228: Psest_0228 - Glycerophosphoryl diester phosphodiesterase, at 237,466 to 238,581 _0228 Psest_0229: Psest_0229 - Dihydrofolate reductase, at 238,670 to 239,248 _0229 Psest_0230: Psest_0230 - Uncharacterized BCR, YitT family COG1284., at 239,336 to 239,983 _0230 Psest_0231: Psest_0231 - phosphoesterase, MJ0936 family, at 239,976 to 240,431 _0231 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.765 kb on + strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.801 kb on - strand, within Psest_0228at 237.833 kb on + strand, within Psest_0228at 237.834 kb on - strand, within Psest_0228at 237.921 kb on + strand, within Psest_0228at 237.922 kb on - strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.947 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.391 kb on + strand, within Psest_0228at 238.392 kb on - strand, within Psest_0228at 238.658 kb on + strandat 238.658 kb on + strandat 238.658 kb on + strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.717 kb on + strandat 238.717 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.302 kb on - strandat 239.302 kb on - strandat 239.302 kb on - strandat 239.465 kb on + strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.522 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.577 kb on - strand, within Psest_0230at 239.596 kb on + strand, within Psest_0230at 239.597 kb on - strand, within Psest_0230at 239.702 kb on + strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.966 kb on + strandat 239.966 kb on + strandat 239.967 kb on - strandat 239.967 kb on - strandat 239.978 kb on - strandat 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.119 kb on + strand, within Psest_0231at 240.241 kb on - strand, within Psest_0231

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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237,725 + Psest_0228 0.23 -0.8
237,725 + Psest_0228 0.23 -1.6
237,725 + Psest_0228 0.23 +0.4
237,725 + Psest_0228 0.23 +1.4
237,725 + Psest_0228 0.23 +1.2
237,725 + Psest_0228 0.23 -0.5
237,725 + Psest_0228 0.23 -0.4
237,725 + Psest_0228 0.23 +0.9
237,726 - Psest_0228 0.23 +1.8
237,726 - Psest_0228 0.23 -0.8
237,726 - Psest_0228 0.23 +0.2
237,726 - Psest_0228 0.23 +0.8
237,726 - Psest_0228 0.23 -0.2
237,726 - Psest_0228 0.23 +1.2
237,726 - Psest_0228 0.23 -0.8
237,726 - Psest_0228 0.23 +1.8
237,726 - Psest_0228 0.23 +0.8
237,726 - Psest_0228 0.23 -0.5
237,726 - Psest_0228 0.23 +1.2
237,765 + Psest_0228 0.27 +1.1
237,766 - Psest_0228 0.27 +0.2
237,766 - Psest_0228 0.27 +1.8
237,801 - Psest_0228 0.30 +2.9
237,833 + Psest_0228 0.33 +0.2
237,834 - Psest_0228 0.33 +2.2
237,921 + Psest_0228 0.41 +2.8
237,922 - Psest_0228 0.41 +1.8
237,923 + Psest_0228 0.41 -0.8
237,923 + Psest_0228 0.41 +0.8
237,923 + Psest_0228 0.41 -0.8
237,923 + Psest_0228 0.41 -0.2
237,923 + Psest_0228 0.41 +3.7
237,923 + Psest_0228 0.41 +0.4
237,923 + Psest_0228 0.41 -0.5
237,923 + Psest_0228 0.41 -1.3
237,923 + Psest_0228 0.41 +3.1
237,924 - Psest_0228 0.41 +0.8
237,924 - Psest_0228 0.41 +0.8
237,924 - Psest_0228 0.41 -0.5
237,924 - Psest_0228 0.41 +0.2
237,924 - Psest_0228 0.41 +0.2
237,924 - Psest_0228 0.41 +2.8
237,924 - Psest_0228 0.41 +0.8
237,924 - Psest_0228 0.41 +1.8
237,924 - Psest_0228 0.41 +0.6
237,924 - Psest_0228 0.41 -1.2
237,924 - Psest_0228 0.41 +2.2
237,924 - Psest_0228 0.41 -0.3
237,924 - Psest_0228 0.41 +1.8
237,924 - Psest_0228 0.41 +3.4
237,947 + Psest_0228 0.43 +0.8
238,361 + Psest_0228 0.80 +0.0
238,361 + Psest_0228 0.80 -0.2
238,362 - Psest_0228 0.80 +1.8
238,362 - Psest_0228 0.80 -1.2
238,362 - Psest_0228 0.80 -1.0
238,391 + Psest_0228 0.83 -1.1
238,392 - Psest_0228 0.83 +1.1
238,658 + +0.2
238,658 + -2.6
238,658 + +3.3
238,659 - -0.5
238,659 - +1.8
238,659 - +0.2
238,659 - +0.8
238,717 + -0.5
238,717 + -0.5
239,301 + -0.5
239,301 + +1.8
239,301 + +0.2
239,301 + +1.4
239,301 + +0.1
239,301 + -1.3
239,301 + -0.0
239,301 + -1.0
239,301 + +0.8
239,301 + +0.6
239,302 - +1.8
239,302 - -0.5
239,302 - +0.4
239,465 + Psest_0230 0.20 +0.5
239,466 - Psest_0230 0.20 -0.8
239,466 - Psest_0230 0.20 -0.5
239,466 - Psest_0230 0.20 -0.5
239,466 - Psest_0230 0.20 +0.8
239,466 - Psest_0230 0.20 +0.8
239,522 + Psest_0230 0.29 -0.8
239,576 + Psest_0230 0.37 -0.4
239,576 + Psest_0230 0.37 +0.1
239,576 + Psest_0230 0.37 -0.5
239,576 + Psest_0230 0.37 +1.8
239,576 + Psest_0230 0.37 +0.4
239,576 + Psest_0230 0.37 -2.1
239,576 + Psest_0230 0.37 +1.8
239,577 - Psest_0230 0.37 -0.5
239,596 + Psest_0230 0.40 +0.8
239,597 - Psest_0230 0.40 -0.5
239,702 + Psest_0230 0.56 +1.1
239,703 - Psest_0230 0.57 -0.2
239,703 - Psest_0230 0.57 +1.3
239,703 - Psest_0230 0.57 -1.9
239,703 - Psest_0230 0.57 -0.3
239,703 - Psest_0230 0.57 +0.1
239,966 + +0.8
239,966 + -1.2
239,967 - +2.1
239,967 - -2.3
239,978 - -1.5
240,085 + Psest_0231 0.24 -1.2
240,085 + Psest_0231 0.24 +0.7
240,085 + Psest_0231 0.24 -0.3
240,085 + Psest_0231 0.24 -1.5
240,085 + Psest_0231 0.24 -0.6
240,085 + Psest_0231 0.24 +0.5
240,086 - Psest_0231 0.24 -1.8
240,086 - Psest_0231 0.24 +1.0
240,086 - Psest_0231 0.24 -1.3
240,119 + Psest_0231 0.31 -1.1
240,241 - Psest_0231 0.58 -0.5

Or see this region's nucleotide sequence