Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2307

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2305 and Psest_2306 overlap by 4 nucleotidesPsest_2306 and Psest_2307 are separated by 132 nucleotidesPsest_2307 and Psest_2308 are separated by 33 nucleotidesPsest_2308 and Psest_2309 are separated by 358 nucleotides Psest_2305: Psest_2305 - UDP-2,3-diacylglucosamine hydrolase, at 2,455,816 to 2,456,538 _2305 Psest_2306: Psest_2306 - Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA, at 2,456,535 to 2,457,185 _2306 Psest_2307: Psest_2307 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,457,318 to 2,458,178 _2307 Psest_2308: Psest_2308 - Predicted Fe-S protein, at 2,458,212 to 2,458,718 _2308 Psest_2309: Psest_2309 - aconitate hydratase 2, at 2,459,077 to 2,461,704 _2309 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2456.536 kb on + strandat 2456.537 kb on - strandat 2456.659 kb on + strand, within Psest_2306at 2456.674 kb on + strand, within Psest_2306at 2456.674 kb on + strand, within Psest_2306at 2456.674 kb on + strand, within Psest_2306at 2456.675 kb on - strand, within Psest_2306at 2456.717 kb on - strand, within Psest_2306at 2456.727 kb on + strand, within Psest_2306at 2456.728 kb on - strand, within Psest_2306at 2456.728 kb on - strand, within Psest_2306at 2456.988 kb on + strand, within Psest_2306at 2456.988 kb on + strand, within Psest_2306at 2456.989 kb on - strand, within Psest_2306at 2456.989 kb on - strand, within Psest_2306at 2456.989 kb on - strand, within Psest_2306at 2456.989 kb on - strand, within Psest_2306at 2457.060 kb on + strand, within Psest_2306at 2457.060 kb on + strand, within Psest_2306at 2457.060 kb on + strand, within Psest_2306at 2457.060 kb on + strand, within Psest_2306at 2457.060 kb on + strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.061 kb on - strand, within Psest_2306at 2457.170 kb on - strandat 2457.170 kb on - strandat 2457.214 kb on + strandat 2457.214 kb on + strandat 2457.214 kb on + strandat 2457.214 kb on + strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.215 kb on - strandat 2457.251 kb on + strandat 2457.251 kb on + strandat 2457.251 kb on + strandat 2457.252 kb on - strandat 2457.252 kb on - strandat 2457.252 kb on - strandat 2457.252 kb on - strandat 2457.252 kb on - strandat 2457.252 kb on - strandat 2457.281 kb on - strandat 2457.281 kb on - strandat 2457.282 kb on + strandat 2457.282 kb on + strandat 2457.283 kb on - strandat 2457.283 kb on - strandat 2457.283 kb on - strandat 2457.686 kb on + strand, within Psest_2307at 2457.686 kb on + strand, within Psest_2307at 2457.687 kb on - strand, within Psest_2307at 2457.829 kb on + strand, within Psest_2307at 2457.829 kb on + strand, within Psest_2307at 2457.829 kb on + strand, within Psest_2307at 2457.884 kb on - strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.961 kb on + strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.962 kb on - strand, within Psest_2307at 2457.965 kb on + strand, within Psest_2307at 2457.966 kb on - strand, within Psest_2307at 2458.016 kb on + strand, within Psest_2307at 2458.017 kb on - strand, within Psest_2307at 2458.036 kb on + strand, within Psest_2307at 2458.037 kb on - strand, within Psest_2307at 2458.082 kb on + strand, within Psest_2307at 2458.412 kb on - strand, within Psest_2308at 2458.574 kb on - strand, within Psest_2308at 2458.688 kb on + strandat 2458.689 kb on - strandat 2458.689 kb on - strandat 2458.689 kb on - strandat 2458.751 kb on + strandat 2458.751 kb on + strandat 2458.751 kb on + strandat 2458.752 kb on - strandat 2458.752 kb on - strandat 2458.752 kb on - strandat 2458.752 kb on - strandat 2458.752 kb on - strandat 2458.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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2,456,536 + +0.1
2,456,537 - +2.1
2,456,659 + Psest_2306 0.19 -0.8
2,456,674 + Psest_2306 0.21 -0.6
2,456,674 + Psest_2306 0.21 -0.7
2,456,674 + Psest_2306 0.21 -0.1
2,456,675 - Psest_2306 0.22 -2.0
2,456,717 - Psest_2306 0.28 -2.3
2,456,727 + Psest_2306 0.29 -0.1
2,456,728 - Psest_2306 0.30 +2.1
2,456,728 - Psest_2306 0.30 -0.3
2,456,988 + Psest_2306 0.70 -0.7
2,456,988 + Psest_2306 0.70 -2.3
2,456,989 - Psest_2306 0.70 -2.2
2,456,989 - Psest_2306 0.70 +2.1
2,456,989 - Psest_2306 0.70 +0.6
2,456,989 - Psest_2306 0.70 +1.7
2,457,060 + Psest_2306 0.81 +0.2
2,457,060 + Psest_2306 0.81 +0.6
2,457,060 + Psest_2306 0.81 -2.6
2,457,060 + Psest_2306 0.81 -1.2
2,457,060 + Psest_2306 0.81 +0.5
2,457,061 - Psest_2306 0.81 +1.4
2,457,061 - Psest_2306 0.81 +1.0
2,457,061 - Psest_2306 0.81 +2.1
2,457,061 - Psest_2306 0.81 -2.6
2,457,061 - Psest_2306 0.81 +0.6
2,457,061 - Psest_2306 0.81 +1.5
2,457,061 - Psest_2306 0.81 +0.9
2,457,061 - Psest_2306 0.81 +1.3
2,457,061 - Psest_2306 0.81 +0.9
2,457,061 - Psest_2306 0.81 -0.5
2,457,061 - Psest_2306 0.81 -2.0
2,457,170 - -1.3
2,457,170 - +0.7
2,457,214 + +2.6
2,457,214 + +0.6
2,457,214 + +1.5
2,457,214 + +0.1
2,457,215 - -0.5
2,457,215 - +2.1
2,457,215 - +0.6
2,457,215 - -2.3
2,457,215 - -1.3
2,457,215 - -2.3
2,457,215 - -0.3
2,457,215 - -0.7
2,457,251 + +0.4
2,457,251 + -2.3
2,457,251 + +0.3
2,457,252 - -1.1
2,457,252 - +0.5
2,457,252 - +0.5
2,457,252 - +0.9
2,457,252 - +0.0
2,457,252 - +2.5
2,457,281 - +1.4
2,457,281 - +2.1
2,457,282 + -0.4
2,457,282 + -0.5
2,457,283 - +2.3
2,457,283 - +0.9
2,457,283 - -0.5
2,457,686 + Psest_2307 0.43 -0.2
2,457,686 + Psest_2307 0.43 -0.2
2,457,687 - Psest_2307 0.43 +0.1
2,457,829 + Psest_2307 0.59 +0.1
2,457,829 + Psest_2307 0.59 +0.6
2,457,829 + Psest_2307 0.59 -0.7
2,457,884 - Psest_2307 0.66 +1.9
2,457,961 + Psest_2307 0.75 -0.7
2,457,961 + Psest_2307 0.75 +1.9
2,457,961 + Psest_2307 0.75 +1.8
2,457,961 + Psest_2307 0.75 -2.1
2,457,961 + Psest_2307 0.75 +0.7
2,457,961 + Psest_2307 0.75 +0.3
2,457,961 + Psest_2307 0.75 +0.2
2,457,962 - Psest_2307 0.75 +1.2
2,457,962 - Psest_2307 0.75 +0.1
2,457,962 - Psest_2307 0.75 -0.1
2,457,962 - Psest_2307 0.75 -0.3
2,457,962 - Psest_2307 0.75 -0.1
2,457,962 - Psest_2307 0.75 +0.5
2,457,962 - Psest_2307 0.75 +1.9
2,457,965 + Psest_2307 0.75 +1.1
2,457,966 - Psest_2307 0.75 +0.1
2,458,016 + Psest_2307 0.81 -0.3
2,458,017 - Psest_2307 0.81 +0.4
2,458,036 + Psest_2307 0.83 +2.3
2,458,037 - Psest_2307 0.84 +0.2
2,458,082 + Psest_2307 0.89 +2.8
2,458,412 - Psest_2308 0.39 +1.1
2,458,574 - Psest_2308 0.71 +2.3
2,458,688 + -0.3
2,458,689 - -0.7
2,458,689 - +1.1
2,458,689 - -0.5
2,458,751 + +1.7
2,458,751 + -1.5
2,458,751 + -0.1
2,458,752 - +0.2
2,458,752 - -1.1
2,458,752 - -0.7
2,458,752 - +1.1
2,458,752 - +0.1
2,458,809 + -1.3

Or see this region's nucleotide sequence