Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2085 and Psest_2086 are separated by 13 nucleotides Psest_2086 and Psest_2087 are separated by 109 nucleotides Psest_2087 and Psest_2088 are separated by 59 nucleotides Psest_2088 and Psest_2089 overlap by 17 nucleotides
Psest_2085: Psest_2085 - Periplasmic serine proteases (ClpP class), at 2,214,098 to 2,215,120
_2085
Psest_2086: Psest_2086 - putative quinone oxidoreductase, YhdH/YhfP family, at 2,215,134 to 2,216,126
_2086
Psest_2087: Psest_2087 - hypothetical protein, at 2,216,236 to 2,216,337
_2087
Psest_2088: Psest_2088 - Uncharacterized protein conserved in bacteria, at 2,216,397 to 2,216,897
_2088
Psest_2089: Psest_2089 - Sulfite reductase, beta subunit (hemoprotein), at 2,216,881 to 2,218,539
_2089
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2214.251 kb on + strand, within Psest_2085 at 2214.516 kb on - strand, within Psest_2085 at 2214.605 kb on + strand, within Psest_2085 at 2214.749 kb on + strand, within Psest_2085 at 2214.824 kb on - strand, within Psest_2085 at 2214.962 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.011 kb on + strand, within Psest_2085 at 2215.011 kb on + strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.060 kb on + strand at 2215.153 kb on + strand at 2215.251 kb on + strand, within Psest_2086 at 2215.280 kb on - strand, within Psest_2086 at 2215.314 kb on + strand, within Psest_2086 at 2215.446 kb on + strand, within Psest_2086 at 2215.516 kb on + strand, within Psest_2086 at 2215.517 kb on - strand, within Psest_2086 at 2215.628 kb on + strand, within Psest_2086 at 2215.659 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.675 kb on + strand, within Psest_2086 at 2215.916 kb on + strand, within Psest_2086 at 2215.916 kb on + strand, within Psest_2086 at 2216.113 kb on + strand at 2216.113 kb on + strand at 2216.114 kb on - strand at 2216.138 kb on + strand at 2216.139 kb on - strand at 2216.139 kb on - strand at 2216.317 kb on - strand, within Psest_2087 at 2216.330 kb on - strand at 2216.330 kb on - strand at 2216.449 kb on + strand, within Psest_2088 at 2216.449 kb on + strand, within Psest_2088 at 2216.449 kb on + strand, within Psest_2088
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 2,214,251 + Psest_2085 0.15 +0.0 2,214,516 - Psest_2085 0.41 +1.0 2,214,605 + Psest_2085 0.50 -0.6 2,214,749 + Psest_2085 0.64 -0.4 2,214,824 - Psest_2085 0.71 -0.2 2,214,962 + Psest_2085 0.84 -0.4 2,215,007 + Psest_2085 0.89 +1.2 2,215,007 + Psest_2085 0.89 -1.5 2,215,007 + Psest_2085 0.89 -0.0 2,215,007 + Psest_2085 0.89 +1.0 2,215,007 + Psest_2085 0.89 +3.6 2,215,007 + Psest_2085 0.89 +1.1 2,215,007 + Psest_2085 0.89 -2.6 2,215,008 - Psest_2085 0.89 -0.4 2,215,008 - Psest_2085 0.89 -2.0 2,215,008 - Psest_2085 0.89 +0.4 2,215,008 - Psest_2085 0.89 -0.6 2,215,008 - Psest_2085 0.89 -0.8 2,215,008 - Psest_2085 0.89 -1.2 2,215,011 + Psest_2085 0.89 +0.4 2,215,011 + Psest_2085 0.89 +0.6 2,215,012 - Psest_2085 0.89 -0.6 2,215,012 - Psest_2085 0.89 -3.3 2,215,012 - Psest_2085 0.89 -1.0 2,215,012 - Psest_2085 0.89 -1.4 2,215,060 + +0.3 2,215,153 + -1.9 2,215,251 + Psest_2086 0.12 +3.0 2,215,280 - Psest_2086 0.15 +1.5 2,215,314 + Psest_2086 0.18 -3.4 2,215,446 + Psest_2086 0.31 +1.3 2,215,516 + Psest_2086 0.38 -1.9 2,215,517 - Psest_2086 0.39 +0.4 2,215,628 + Psest_2086 0.50 +0.4 2,215,659 + Psest_2086 0.53 +1.0 2,215,661 + Psest_2086 0.53 -0.6 2,215,661 + Psest_2086 0.53 -1.6 2,215,661 + Psest_2086 0.53 +1.2 2,215,661 + Psest_2086 0.53 -1.4 2,215,661 + Psest_2086 0.53 +1.6 2,215,661 + Psest_2086 0.53 -0.0 2,215,662 - Psest_2086 0.53 -1.2 2,215,662 - Psest_2086 0.53 -3.5 2,215,662 - Psest_2086 0.53 -0.4 2,215,675 + Psest_2086 0.54 -1.2 2,215,916 + Psest_2086 0.79 +1.9 2,215,916 + Psest_2086 0.79 +0.2 2,216,113 + +2.1 2,216,113 + -0.0 2,216,114 - +1.6 2,216,138 + -0.4 2,216,139 - +0.2 2,216,139 - +1.1 2,216,317 - Psest_2087 0.79 +0.6 2,216,330 - -0.4 2,216,330 - +0.8 2,216,449 + Psest_2088 0.10 +0.4 2,216,449 + Psest_2088 0.10 -1.3 2,216,449 + Psest_2088 0.10 -1.1
Or see this region's nucleotide sequence