Experiment: Def 2-Furfuraldehyde 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0179 and Psest_0180 are separated by 120 nucleotides Psest_0180 and Psest_0181 are separated by 212 nucleotides
Psest_0179: Psest_0179 - ABC-type Fe3+ transport system, periplasmic component, at 172,412 to 173,413
_0179
Psest_0180: Psest_0180 - ABC-type Fe3+ transport system, permease component, at 173,534 to 175,150
_0180
Psest_0181: Psest_0181 - glycine cleavage system T protein, at 175,363 to 176,445
_0181
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 173.479 kb on + strand at 175.266 kb on - strand at 175.313 kb on + strand at 175.374 kb on + strand at 175.374 kb on + strand at 175.375 kb on - strand at 175.384 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.464 kb on - strand at 175.555 kb on + strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.924 kb on + strand, within Psest_0181
Per-strain Table
Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol% remove 173,479 + -2.4 175,266 - +0.8 175,313 + +0.2 175,374 + -1.5 175,374 + -0.9 175,375 - -2.0 175,384 + +0.2 175,463 + -2.3 175,463 + -1.2 175,463 + -2.6 175,463 + -1.9 175,464 - -0.5 175,555 + Psest_0181 0.18 -1.8 175,556 - Psest_0181 0.18 -3.3 175,556 - Psest_0181 0.18 -2.3 175,556 - Psest_0181 0.18 -2.0 175,556 - Psest_0181 0.18 +0.5 175,615 + Psest_0181 0.23 -0.8 175,615 + Psest_0181 0.23 +0.8 175,615 + Psest_0181 0.23 +0.8 175,667 - Psest_0181 0.28 -2.2 175,667 - Psest_0181 0.28 -2.8 175,924 + Psest_0181 0.52 +0.1
Or see this region's nucleotide sequence