Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0166

Experiment: Def 2-Furfuraldehyde 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0163 and Psest_0164 are separated by 2 nucleotidesPsest_0164 and Psest_0165 are separated by 64 nucleotidesPsest_0165 and Psest_0166 are separated by 51 nucleotidesPsest_0166 and Psest_0167 are separated by 213 nucleotidesPsest_0167 and Psest_0168 are separated by 1 nucleotides Psest_0163: Psest_0163 - Rhodanese-related sulfurtransferase, at 162,307 to 162,720 _0163 Psest_0164: Psest_0164 - Glutaredoxin, GrxC family, at 162,723 to 162,977 _0164 Psest_0165: Psest_0165 - protein-export chaperone SecB, at 163,042 to 163,536 _0165 Psest_0166: Psest_0166 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 163,588 to 164,568 _0166 Psest_0167: Psest_0167 - Flagellar basal body-associated protein, at 164,782 to 165,183 _0167 Psest_0168: Psest_0168 - Uncharacterized conserved protein, at 165,185 to 165,634 _0168 Position (kb) 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.807 kb on + strand, within Psest_0164at 163.028 kb on - strandat 163.028 kb on - strandat 163.056 kb on + strandat 163.057 kb on - strandat 163.117 kb on + strand, within Psest_0165at 163.118 kb on - strand, within Psest_0165at 163.118 kb on - strand, within Psest_0165at 163.477 kb on + strand, within Psest_0165at 163.477 kb on + strand, within Psest_0165at 163.477 kb on + strand, within Psest_0165at 163.735 kb on - strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.931 kb on + strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.932 kb on - strand, within Psest_0166at 163.998 kb on - strand, within Psest_0166at 163.998 kb on - strand, within Psest_0166at 163.998 kb on - strand, within Psest_0166at 164.175 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.198 kb on + strand, within Psest_0166at 164.199 kb on - strand, within Psest_0166at 164.199 kb on - strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.417 kb on + strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.418 kb on - strand, within Psest_0166at 164.626 kb on - strandat 164.644 kb on + strandat 164.644 kb on + strandat 164.645 kb on - strandat 164.645 kb on - strandat 164.695 kb on + strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.696 kb on - strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.697 kb on + strandat 164.698 kb on - strandat 164.788 kb on + strandat 164.875 kb on + strand, within Psest_0167at 164.876 kb on - strand, within Psest_0167at 164.878 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.908 kb on + strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.909 kb on - strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.932 kb on + strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.933 kb on - strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.935 kb on + strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 164.936 kb on - strand, within Psest_0167at 165.135 kb on + strand, within Psest_0167at 165.136 kb on - strand, within Psest_0167at 165.486 kb on + strand, within Psest_0168at 165.486 kb on + strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.487 kb on - strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.514 kb on + strand, within Psest_0168at 165.515 kb on - strand, within Psest_0168at 165.515 kb on - strand, within Psest_0168at 165.541 kb on - strand, within Psest_0168at 165.549 kb on - strand, within Psest_0168

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Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
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162,718 + +0.6
162,718 + +2.5
162,718 + -0.5
162,718 + +1.3
162,718 + +1.7
162,718 + +2.5
162,718 + -0.5
162,718 + -0.2
162,741 + -0.2
162,741 + +0.3
162,741 + +0.8
162,741 + +1.1
162,741 + +1.8
162,741 + -1.5
162,741 + +0.2
162,741 + -0.8
162,741 + -1.0
162,741 + +1.9
162,741 + +1.0
162,741 + -1.2
162,741 + +0.7
162,741 + -0.5
162,741 + +1.4
162,741 + -0.0
162,741 + -1.0
162,741 + +2.3
162,741 + +2.1
162,741 + -2.7
162,741 + +0.8
162,742 - -3.2
162,742 - -1.4
162,742 - -1.7
162,742 - -0.5
162,742 - -1.3
162,742 - -0.6
162,742 - -2.2
162,743 + -1.8
162,743 + +1.3
162,807 + Psest_0164 0.33 -0.5
163,028 - -1.4
163,028 - -0.8
163,056 + -1.2
163,057 - -1.4
163,117 + Psest_0165 0.15 -1.4
163,118 - Psest_0165 0.15 +1.1
163,118 - Psest_0165 0.15 -0.5
163,477 + Psest_0165 0.88 +1.1
163,477 + Psest_0165 0.88 +1.0
163,477 + Psest_0165 0.88 -1.1
163,735 - Psest_0166 0.15 +1.3
163,931 + Psest_0166 0.35 +0.5
163,931 + Psest_0166 0.35 +2.2
163,931 + Psest_0166 0.35 -0.7
163,931 + Psest_0166 0.35 +2.1
163,931 + Psest_0166 0.35 -2.4
163,931 + Psest_0166 0.35 -0.6
163,931 + Psest_0166 0.35 +0.9
163,931 + Psest_0166 0.35 +0.4
163,931 + Psest_0166 0.35 -0.1
163,931 + Psest_0166 0.35 +1.4
163,931 + Psest_0166 0.35 -1.4
163,931 + Psest_0166 0.35 +0.4
163,932 - Psest_0166 0.35 +1.1
163,932 - Psest_0166 0.35 +2.2
163,932 - Psest_0166 0.35 +1.4
163,932 - Psest_0166 0.35 -1.8
163,932 - Psest_0166 0.35 -0.9
163,932 - Psest_0166 0.35 -3.1
163,998 - Psest_0166 0.42 +2.2
163,998 - Psest_0166 0.42 +1.8
163,998 - Psest_0166 0.42 -1.7
164,175 + Psest_0166 0.60 +1.1
164,198 + Psest_0166 0.62 +0.2
164,198 + Psest_0166 0.62 +0.4
164,198 + Psest_0166 0.62 -1.1
164,198 + Psest_0166 0.62 -2.2
164,198 + Psest_0166 0.62 -0.0
164,198 + Psest_0166 0.62 +1.2
164,199 - Psest_0166 0.62 +1.0
164,199 - Psest_0166 0.62 +0.1
164,417 + Psest_0166 0.85 -0.8
164,417 + Psest_0166 0.85 -1.2
164,417 + Psest_0166 0.85 +1.5
164,417 + Psest_0166 0.85 -0.2
164,417 + Psest_0166 0.85 -3.5
164,418 - Psest_0166 0.85 +0.6
164,418 - Psest_0166 0.85 -2.3
164,418 - Psest_0166 0.85 +1.5
164,418 - Psest_0166 0.85 +0.9
164,418 - Psest_0166 0.85 +1.5
164,626 - +0.4
164,644 + +3.0
164,644 + -1.8
164,645 - +2.7
164,645 - +0.8
164,695 + -2.2
164,696 - +1.4
164,696 - +0.0
164,696 - +0.1
164,696 - -0.5
164,697 + -0.8
164,697 + -1.8
164,697 + -0.1
164,697 + -1.0
164,698 - -0.9
164,788 + -1.5
164,875 + Psest_0167 0.23 +0.1
164,876 - Psest_0167 0.23 +0.5
164,878 + Psest_0167 0.24 +0.4
164,908 + Psest_0167 0.31 -2.3
164,908 + Psest_0167 0.31 -0.4
164,908 + Psest_0167 0.31 +0.3
164,908 + Psest_0167 0.31 -0.6
164,908 + Psest_0167 0.31 +0.2
164,908 + Psest_0167 0.31 -1.7
164,908 + Psest_0167 0.31 -1.0
164,908 + Psest_0167 0.31 +0.8
164,908 + Psest_0167 0.31 +0.6
164,908 + Psest_0167 0.31 +0.1
164,908 + Psest_0167 0.31 +0.1
164,908 + Psest_0167 0.31 -0.6
164,909 - Psest_0167 0.32 -1.8
164,909 - Psest_0167 0.32 -3.5
164,909 - Psest_0167 0.32 -1.0
164,909 - Psest_0167 0.32 -1.4
164,909 - Psest_0167 0.32 -2.2
164,909 - Psest_0167 0.32 -2.7
164,909 - Psest_0167 0.32 -1.1
164,932 + Psest_0167 0.37 -1.5
164,932 + Psest_0167 0.37 +0.9
164,932 + Psest_0167 0.37 +0.5
164,932 + Psest_0167 0.37 -2.0
164,932 + Psest_0167 0.37 -0.9
164,933 - Psest_0167 0.38 +0.1
164,933 - Psest_0167 0.38 -1.8
164,933 - Psest_0167 0.38 -0.5
164,935 + Psest_0167 0.38 +0.9
164,935 + Psest_0167 0.38 -0.8
164,935 + Psest_0167 0.38 -0.7
164,935 + Psest_0167 0.38 -2.1
164,935 + Psest_0167 0.38 -2.7
164,935 + Psest_0167 0.38 +1.8
164,935 + Psest_0167 0.38 -0.7
164,936 - Psest_0167 0.38 -2.4
164,936 - Psest_0167 0.38 -1.8
164,936 - Psest_0167 0.38 +0.7
164,936 - Psest_0167 0.38 +1.8
164,936 - Psest_0167 0.38 +0.9
164,936 - Psest_0167 0.38 +2.5
164,936 - Psest_0167 0.38 -0.5
164,936 - Psest_0167 0.38 -1.2
164,936 - Psest_0167 0.38 -0.5
164,936 - Psest_0167 0.38 -0.8
165,135 + Psest_0167 0.88 -1.6
165,136 - Psest_0167 0.88 -0.7
165,486 + Psest_0168 0.67 +0.0
165,486 + Psest_0168 0.67 +0.5
165,487 - Psest_0168 0.67 -2.0
165,487 - Psest_0168 0.67 -0.3
165,487 - Psest_0168 0.67 -2.7
165,487 - Psest_0168 0.67 -0.2
165,487 - Psest_0168 0.67 -0.3
165,514 + Psest_0168 0.73 -2.0
165,514 + Psest_0168 0.73 -1.4
165,514 + Psest_0168 0.73 +0.2
165,515 - Psest_0168 0.73 -0.3
165,515 - Psest_0168 0.73 +0.8
165,541 - Psest_0168 0.79 +1.7
165,549 - Psest_0168 0.81 -2.1

Or see this region's nucleotide sequence