Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1674

Experiment: Def 2-Furfuraldehyde 0.032 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1672 and Psest_1673 overlap by 4 nucleotidesPsest_1673 and Psest_1674 overlap by 1 nucleotidesPsest_1674 and Psest_1675 are separated by 45 nucleotidesPsest_1675 and Psest_1676 overlap by 4 nucleotidesPsest_1676 and Psest_1677 are separated by 1 nucleotides Psest_1672: Psest_1672 - Biopolymer transport proteins, at 1,781,555 to 1,782,187 _1672 Psest_1673: Psest_1673 - Biopolymer transport protein, at 1,782,184 to 1,782,612 _1673 Psest_1674: Psest_1674 - tetraacyldisaccharide 4'-kinase, at 1,782,612 to 1,783,616 _1674 Psest_1675: Psest_1675 - Uncharacterized conserved protein, at 1,783,662 to 1,783,847 _1675 Psest_1676: Psest_1676 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,783,844 to 1,784,608 _1676 Psest_1677: Psest_1677 - Protein-tyrosine-phosphatase, at 1,784,610 to 1,785,077 _1677 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -2 -1 0 1 2at 1783.614 kb on + strandat 1783.614 kb on + strandat 1783.614 kb on + strandat 1783.730 kb on + strand, within Psest_1675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def 2-Furfuraldehyde 0.032 vol%
remove
1,783,614 + +2.7
1,783,614 + -0.5
1,783,614 + -1.8
1,783,730 + Psest_1675 0.37 +1.5

Or see this region's nucleotide sequence