Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0951 and Psest_0952 overlap by 4 nucleotides Psest_0952 and Psest_0953 overlap by 4 nucleotides Psest_0953 and Psest_0954 overlap by 4 nucleotides Psest_0954 and Psest_0955 are separated by 90 nucleotides
Psest_0951: Psest_0951 - FAD/FMN-containing dehydrogenases, at 1,030,557 to 1,033,409
_0951
Psest_0952: Psest_0952 - Uncharacterized conserved protein, at 1,033,406 to 1,034,077
_0952
Psest_0953: Psest_0953 - iron-sulfur cluster-binding protein, at 1,034,074 to 1,035,534
_0953
Psest_0954: Psest_0954 - Fe-S oxidoreductase, at 1,035,531 to 1,036,352
_0954
Psest_0955: Psest_0955 - D,L-lactate:H+ symporter (from data) , at 1,036,443 to 1,038,137
_0955
Position (kb)
1034
1035
1036 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1033.212 kb on + strand at 1033.273 kb on + strand at 1033.459 kb on - strand at 1033.459 kb on - strand at 1033.560 kb on + strand, within Psest_0952 at 1033.560 kb on + strand, within Psest_0952 at 1033.972 kb on - strand, within Psest_0952 at 1033.972 kb on - strand, within Psest_0952 at 1033.972 kb on - strand, within Psest_0952 at 1033.972 kb on - strand, within Psest_0952 at 1033.998 kb on - strand, within Psest_0952 at 1034.018 kb on - strand at 1034.220 kb on - strand, within Psest_0953 at 1034.283 kb on - strand, within Psest_0953 at 1034.529 kb on - strand, within Psest_0953 at 1034.529 kb on - strand, within Psest_0953 at 1034.696 kb on + strand, within Psest_0953 at 1034.696 kb on + strand, within Psest_0953 at 1034.697 kb on - strand, within Psest_0953 at 1034.697 kb on - strand, within Psest_0953 at 1034.697 kb on - strand, within Psest_0953 at 1034.774 kb on - strand, within Psest_0953 at 1034.799 kb on + strand, within Psest_0953 at 1034.799 kb on + strand, within Psest_0953 at 1034.800 kb on - strand, within Psest_0953 at 1034.800 kb on - strand, within Psest_0953 at 1034.800 kb on - strand, within Psest_0953 at 1034.803 kb on + strand, within Psest_0953 at 1034.975 kb on + strand, within Psest_0953 at 1035.049 kb on - strand, within Psest_0953 at 1035.083 kb on + strand, within Psest_0953 at 1035.083 kb on + strand, within Psest_0953 at 1035.083 kb on + strand, within Psest_0953 at 1035.083 kb on + strand, within Psest_0953 at 1035.083 kb on + strand, within Psest_0953 at 1035.084 kb on - strand, within Psest_0953 at 1035.084 kb on - strand, within Psest_0953 at 1035.517 kb on - strand at 1035.860 kb on + strand, within Psest_0954 at 1035.860 kb on + strand, within Psest_0954 at 1035.860 kb on + strand, within Psest_0954 at 1035.861 kb on - strand, within Psest_0954 at 1035.861 kb on - strand, within Psest_0954 at 1035.861 kb on - strand, within Psest_0954 at 1035.861 kb on - strand, within Psest_0954 at 1035.861 kb on - strand, within Psest_0954 at 1036.115 kb on - strand, within Psest_0954 at 1036.115 kb on - strand, within Psest_0954 at 1036.126 kb on + strand, within Psest_0954 at 1036.222 kb on + strand, within Psest_0954 at 1036.255 kb on + strand, within Psest_0954 at 1036.256 kb on - strand, within Psest_0954 at 1036.256 kb on - strand, within Psest_0954 at 1036.256 kb on - strand, within Psest_0954 at 1036.280 kb on - strand at 1036.337 kb on - strand at 1036.444 kb on + strand at 1036.444 kb on + strand at 1036.445 kb on - strand at 1036.445 kb on - strand at 1036.480 kb on + strand at 1036.480 kb on + strand at 1036.480 kb on + strand at 1036.480 kb on + strand at 1036.519 kb on + strand at 1036.519 kb on + strand at 1036.519 kb on + strand at 1036.519 kb on + strand at 1036.519 kb on + strand at 1036.520 kb on - strand at 1036.520 kb on - strand at 1036.520 kb on - strand at 1036.520 kb on - strand at 1036.520 kb on - strand at 1036.523 kb on - strand at 1036.523 kb on - strand at 1036.523 kb on - strand at 1036.530 kb on - strand at 1036.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,033,212 + -0.7 1,033,273 + -0.3 1,033,459 - -4.5 1,033,459 - -4.6 1,033,560 + Psest_0952 0.23 -0.5 1,033,560 + Psest_0952 0.23 -2.1 1,033,972 - Psest_0952 0.84 -2.1 1,033,972 - Psest_0952 0.84 -2.4 1,033,972 - Psest_0952 0.84 +0.1 1,033,972 - Psest_0952 0.84 -2.4 1,033,998 - Psest_0952 0.88 -2.1 1,034,018 - -1.5 1,034,220 - Psest_0953 0.10 -5.0 1,034,283 - Psest_0953 0.14 -2.7 1,034,529 - Psest_0953 0.31 -1.7 1,034,529 - Psest_0953 0.31 -3.0 1,034,696 + Psest_0953 0.43 -2.6 1,034,696 + Psest_0953 0.43 -3.6 1,034,697 - Psest_0953 0.43 -2.4 1,034,697 - Psest_0953 0.43 -4.0 1,034,697 - Psest_0953 0.43 -3.4 1,034,774 - Psest_0953 0.48 -1.2 1,034,799 + Psest_0953 0.50 -4.0 1,034,799 + Psest_0953 0.50 -1.9 1,034,800 - Psest_0953 0.50 -4.1 1,034,800 - Psest_0953 0.50 -0.7 1,034,800 - Psest_0953 0.50 -3.5 1,034,803 + Psest_0953 0.50 -2.6 1,034,975 + Psest_0953 0.62 -2.9 1,035,049 - Psest_0953 0.67 -3.2 1,035,083 + Psest_0953 0.69 -1.7 1,035,083 + Psest_0953 0.69 -4.9 1,035,083 + Psest_0953 0.69 -4.5 1,035,083 + Psest_0953 0.69 -1.2 1,035,083 + Psest_0953 0.69 -4.4 1,035,084 - Psest_0953 0.69 -3.2 1,035,084 - Psest_0953 0.69 -1.9 1,035,517 - -2.2 1,035,860 + Psest_0954 0.40 -3.6 1,035,860 + Psest_0954 0.40 -3.2 1,035,860 + Psest_0954 0.40 -1.7 1,035,861 - Psest_0954 0.40 -1.4 1,035,861 - Psest_0954 0.40 -4.9 1,035,861 - Psest_0954 0.40 -0.9 1,035,861 - Psest_0954 0.40 -4.3 1,035,861 - Psest_0954 0.40 -5.2 1,036,115 - Psest_0954 0.71 -3.9 1,036,115 - Psest_0954 0.71 -3.2 1,036,126 + Psest_0954 0.72 -0.9 1,036,222 + Psest_0954 0.84 -4.4 1,036,255 + Psest_0954 0.88 -1.6 1,036,256 - Psest_0954 0.88 -1.7 1,036,256 - Psest_0954 0.88 -3.4 1,036,256 - Psest_0954 0.88 -2.6 1,036,280 - -1.7 1,036,337 - -1.2 1,036,444 + -2.8 1,036,444 + -0.9 1,036,445 - -0.1 1,036,445 - -0.2 1,036,480 + -2.5 1,036,480 + -3.2 1,036,480 + -2.8 1,036,480 + -1.7 1,036,519 + -4.2 1,036,519 + -3.2 1,036,519 + -1.7 1,036,519 + -2.2 1,036,519 + -0.5 1,036,520 - +0.3 1,036,520 - +0.9 1,036,520 - +0.3 1,036,520 - +1.3 1,036,520 - +0.1 1,036,523 - -0.8 1,036,523 - -0.2 1,036,523 - +1.0 1,036,530 - +2.3 1,036,530 - -0.4
Or see this region's nucleotide sequence