Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0891

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0890 and Psest_0891 are separated by 59 nucleotidesPsest_0891 and Psest_0892 are separated by 60 nucleotidesPsest_0892 and Psest_0893 are separated by 108 nucleotides Psest_0890: Psest_0890 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 966,921 to 968,030 _0890 Psest_0891: Psest_0891 - Uncharacterized protein conserved in bacteria, at 968,090 to 968,314 _0891 Psest_0892: Psest_0892 - Short-chain alcohol dehydrogenase of unknown specificity, at 968,375 to 969,154 _0892 Psest_0893: Psest_0893 - Transcriptional regulator, at 969,263 to 970,177 _0893 Position (kb) 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 967.600 kb on + strand, within Psest_0890at 967.601 kb on - strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.633 kb on + strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.652 kb on - strand, within Psest_0890at 967.768 kb on + strand, within Psest_0890at 967.769 kb on - strand, within Psest_0890at 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.052 kb on + strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.057 kb on - strandat 968.057 kb on - strandat 968.092 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.335 kb on + strandat 968.377 kb on - strandat 968.413 kb on + strandat 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.620 kb on + strand, within Psest_0892at 968.621 kb on - strand, within Psest_0892at 968.649 kb on + strand, within Psest_0892at 968.758 kb on - strand, within Psest_0892at 968.780 kb on - strand, within Psest_0892at 968.858 kb on + strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.875 kb on - strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.992 kb on + strand, within Psest_0892at 968.993 kb on - strand, within Psest_0892at 969.018 kb on - strand, within Psest_0892at 969.145 kb on - strandat 969.184 kb on + strandat 969.185 kb on - strandat 969.185 kb on - strandat 969.185 kb on - strandat 969.206 kb on - strandat 969.230 kb on - strandat 969.269 kb on - strandat 969.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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967,600 + Psest_0890 0.61 +0.7
967,601 - Psest_0890 0.61 -0.3
967,627 + Psest_0890 0.64 +0.7
967,627 + Psest_0890 0.64 +0.5
967,627 + Psest_0890 0.64 +0.5
967,627 + Psest_0890 0.64 +1.0
967,628 - Psest_0890 0.64 +1.6
967,628 - Psest_0890 0.64 -1.5
967,628 - Psest_0890 0.64 -1.3
967,628 - Psest_0890 0.64 +1.0
967,628 - Psest_0890 0.64 -1.0
967,633 + Psest_0890 0.64 -0.6
967,634 - Psest_0890 0.64 +0.2
967,634 - Psest_0890 0.64 -1.1
967,634 - Psest_0890 0.64 +0.3
967,634 - Psest_0890 0.64 +0.1
967,651 + Psest_0890 0.66 +0.9
967,651 + Psest_0890 0.66 +1.6
967,651 + Psest_0890 0.66 +0.3
967,651 + Psest_0890 0.66 +0.0
967,651 + Psest_0890 0.66 +2.5
967,652 - Psest_0890 0.66 -0.3
967,768 + Psest_0890 0.76 +0.7
967,769 - Psest_0890 0.76 -0.5
968,045 + -1.8
968,045 + -1.9
968,046 - +0.6
968,048 + +0.2
968,048 + -0.2
968,048 + -0.5
968,049 - +1.2
968,049 - +2.1
968,049 - +2.0
968,049 - -0.3
968,049 - +1.3
968,049 - +0.3
968,049 - +0.0
968,052 + -0.6
968,053 - +0.0
968,053 - +1.3
968,053 - +2.0
968,057 - -0.6
968,057 - +0.6
968,092 - +0.2
968,101 - +1.4
968,101 - +1.8
968,101 - +1.8
968,187 + Psest_0891 0.43 +2.3
968,187 + Psest_0891 0.43 -3.3
968,187 + Psest_0891 0.43 -2.4
968,187 + Psest_0891 0.43 -0.3
968,187 + Psest_0891 0.43 -3.1
968,187 + Psest_0891 0.43 -0.2
968,188 - Psest_0891 0.44 +1.4
968,188 - Psest_0891 0.44 +0.9
968,188 - Psest_0891 0.44 +1.2
968,188 - Psest_0891 0.44 -0.1
968,188 - Psest_0891 0.44 +1.8
968,188 - Psest_0891 0.44 +1.0
968,188 - Psest_0891 0.44 +1.7
968,188 - Psest_0891 0.44 +1.0
968,188 - Psest_0891 0.44 +1.3
968,335 + -0.5
968,377 - +0.9
968,413 + -1.3
968,490 + Psest_0892 0.15 +1.4
968,490 + Psest_0892 0.15 +0.2
968,490 + Psest_0892 0.15 -0.6
968,490 + Psest_0892 0.15 -1.3
968,490 + Psest_0892 0.15 -1.2
968,491 - Psest_0892 0.15 +0.4
968,491 - Psest_0892 0.15 +1.4
968,491 - Psest_0892 0.15 -0.0
968,491 - Psest_0892 0.15 +0.9
968,491 - Psest_0892 0.15 +1.0
968,491 - Psest_0892 0.15 +0.9
968,620 + Psest_0892 0.31 -0.2
968,621 - Psest_0892 0.32 +1.4
968,649 + Psest_0892 0.35 +3.2
968,758 - Psest_0892 0.49 +0.6
968,780 - Psest_0892 0.52 -1.3
968,858 + Psest_0892 0.62 -0.1
968,859 - Psest_0892 0.62 -0.1
968,859 - Psest_0892 0.62 -2.0
968,859 - Psest_0892 0.62 +0.6
968,859 - Psest_0892 0.62 +1.4
968,859 - Psest_0892 0.62 -1.0
968,859 - Psest_0892 0.62 +4.4
968,859 - Psest_0892 0.62 -1.4
968,859 - Psest_0892 0.62 -1.9
968,859 - Psest_0892 0.62 -0.2
968,859 - Psest_0892 0.62 -0.8
968,874 + Psest_0892 0.64 -1.5
968,874 + Psest_0892 0.64 -2.7
968,875 - Psest_0892 0.64 -0.2
968,923 + Psest_0892 0.70 -0.7
968,923 + Psest_0892 0.70 -1.6
968,923 + Psest_0892 0.70 +0.3
968,924 - Psest_0892 0.70 +0.1
968,924 - Psest_0892 0.70 -1.7
968,924 - Psest_0892 0.70 -2.0
968,992 + Psest_0892 0.79 +0.0
968,993 - Psest_0892 0.79 -1.0
969,018 - Psest_0892 0.82 -1.8
969,145 - +2.3
969,184 + -1.0
969,185 - +1.7
969,185 - +0.6
969,185 - -1.5
969,206 - -0.9
969,230 - -3.5
969,269 - -1.1
969,287 - -1.1

Or see this region's nucleotide sequence