Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0871 and Psest_0872 are separated by 174 nucleotides Psest_0872 and Psest_0873 overlap by 1 nucleotides Psest_0873 and Psest_0874 are separated by 122 nucleotides
Psest_0871: Psest_0871 - maltose ABC transporter, ATPase component MalK <small>(from data)</small>, at 947,237 to 948,352
_0871
Psest_0872: Psest_0872 - Helix-turn-helix., at 948,527 to 948,844
_0872
Psest_0873: Psest_0873 - HipA N-terminal domain, at 948,844 to 950,163
_0873
Psest_0874: Psest_0874 - Type I restriction-modification system methyltransferase subunit, at 950,286 to 952,262
_0874
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 947.901 kb on - strand, within Psest_0871 at 948.167 kb on + strand, within Psest_0871 at 948.168 kb on - strand, within Psest_0871 at 948.179 kb on + strand, within Psest_0871 at 948.179 kb on + strand, within Psest_0871 at 948.179 kb on + strand, within Psest_0871 at 948.179 kb on + strand, within Psest_0871 at 948.180 kb on - strand, within Psest_0871 at 948.180 kb on - strand, within Psest_0871 at 948.180 kb on - strand, within Psest_0871 at 948.344 kb on + strand at 948.344 kb on + strand at 948.344 kb on + strand at 948.345 kb on - strand at 948.345 kb on - strand at 948.345 kb on - strand at 948.345 kb on - strand at 948.778 kb on + strand, within Psest_0872 at 948.778 kb on + strand, within Psest_0872 at 948.911 kb on + strand at 948.965 kb on + strand at 948.965 kb on + strand at 948.965 kb on + strand at 948.966 kb on - strand at 948.966 kb on - strand at 948.966 kb on - strand at 949.302 kb on + strand, within Psest_0873 at 949.302 kb on + strand, within Psest_0873 at 949.302 kb on + strand, within Psest_0873 at 949.303 kb on - strand, within Psest_0873 at 949.303 kb on - strand, within Psest_0873 at 949.303 kb on - strand, within Psest_0873 at 949.303 kb on - strand, within Psest_0873 at 949.318 kb on + strand, within Psest_0873 at 949.318 kb on + strand, within Psest_0873 at 949.318 kb on + strand, within Psest_0873 at 949.319 kb on - strand, within Psest_0873 at 949.319 kb on - strand, within Psest_0873 at 949.319 kb on - strand, within Psest_0873 at 949.353 kb on + strand, within Psest_0873 at 949.353 kb on + strand, within Psest_0873 at 949.354 kb on - strand, within Psest_0873 at 949.354 kb on - strand, within Psest_0873 at 949.369 kb on - strand, within Psest_0873 at 949.452 kb on - strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.483 kb on + strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.484 kb on - strand, within Psest_0873 at 949.501 kb on + strand, within Psest_0873 at 949.501 kb on + strand, within Psest_0873 at 949.502 kb on - strand, within Psest_0873 at 949.502 kb on - strand, within Psest_0873 at 949.561 kb on - strand, within Psest_0873 at 949.597 kb on + strand, within Psest_0873 at 949.598 kb on - strand, within Psest_0873 at 949.598 kb on - strand, within Psest_0873 at 949.598 kb on - strand, within Psest_0873 at 949.598 kb on - strand, within Psest_0873 at 949.603 kb on + strand, within Psest_0873 at 949.603 kb on + strand, within Psest_0873 at 949.603 kb on + strand, within Psest_0873 at 949.603 kb on + strand, within Psest_0873 at 949.603 kb on + strand, within Psest_0873 at 949.604 kb on - strand, within Psest_0873 at 949.604 kb on - strand, within Psest_0873 at 949.604 kb on - strand, within Psest_0873 at 949.604 kb on - strand, within Psest_0873 at 949.769 kb on + strand, within Psest_0873 at 949.783 kb on + strand, within Psest_0873 at 949.783 kb on + strand, within Psest_0873 at 949.784 kb on - strand, within Psest_0873 at 949.784 kb on - strand, within Psest_0873 at 949.784 kb on - strand, within Psest_0873 at 949.896 kb on + strand, within Psest_0873 at 950.116 kb on - strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.199 kb on + strand at 950.200 kb on - strand at 950.200 kb on - strand at 950.200 kb on - strand at 950.248 kb on - strand at 950.252 kb on + strand at 950.283 kb on + strand at 950.283 kb on + strand at 950.283 kb on + strand at 950.284 kb on - strand at 950.420 kb on - strand at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.592 kb on + strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.593 kb on - strand, within Psest_0874 at 950.610 kb on - strand, within Psest_0874 at 950.685 kb on + strand, within Psest_0874 at 950.685 kb on + strand, within Psest_0874 at 950.686 kb on - strand, within Psest_0874 at 950.686 kb on - strand, within Psest_0874 at 950.756 kb on + strand, within Psest_0874 at 950.756 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.907 kb on + strand, within Psest_0874 at 950.908 kb on - strand, within Psest_0874 at 950.908 kb on - strand, within Psest_0874 at 950.908 kb on - strand, within Psest_0874 at 950.908 kb on - strand, within Psest_0874 at 950.908 kb on - strand at 950.908 kb on - strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.955 kb on + strand, within Psest_0874 at 950.956 kb on - strand, within Psest_0874 at 950.956 kb on - strand, within Psest_0874 at 950.956 kb on - strand, within Psest_0874 at 950.956 kb on - strand, within Psest_0874
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 947,901 - Psest_0871 0.59 +0.0 948,167 + Psest_0871 0.83 -0.5 948,168 - Psest_0871 0.83 -1.5 948,179 + Psest_0871 0.84 -1.5 948,179 + Psest_0871 0.84 +1.4 948,179 + Psest_0871 0.84 -0.1 948,179 + Psest_0871 0.84 -0.7 948,180 - Psest_0871 0.84 +2.0 948,180 - Psest_0871 0.84 +0.5 948,180 - Psest_0871 0.84 +0.3 948,344 + -0.3 948,344 + -0.2 948,344 + -0.0 948,345 - +0.3 948,345 - +1.2 948,345 - -0.2 948,345 - -1.1 948,778 + Psest_0872 0.79 +0.2 948,778 + Psest_0872 0.79 +0.0 948,911 + +0.1 948,965 + -0.3 948,965 + +1.6 948,965 + +0.9 948,966 - +0.0 948,966 - -0.9 948,966 - +0.4 949,302 + Psest_0873 0.35 -3.4 949,302 + Psest_0873 0.35 -0.5 949,302 + Psest_0873 0.35 -2.0 949,303 - Psest_0873 0.35 -0.9 949,303 - Psest_0873 0.35 -0.1 949,303 - Psest_0873 0.35 -0.0 949,303 - Psest_0873 0.35 -0.4 949,318 + Psest_0873 0.36 -1.5 949,318 + Psest_0873 0.36 +0.4 949,318 + Psest_0873 0.36 -1.1 949,319 - Psest_0873 0.36 +1.5 949,319 - Psest_0873 0.36 +0.1 949,319 - Psest_0873 0.36 -0.5 949,353 + Psest_0873 0.39 -1.2 949,353 + Psest_0873 0.39 +1.1 949,354 - Psest_0873 0.39 -1.1 949,354 - Psest_0873 0.39 -0.1 949,369 - Psest_0873 0.40 -1.0 949,452 - Psest_0873 0.46 -0.5 949,483 + Psest_0873 0.48 -0.5 949,483 + Psest_0873 0.48 -0.4 949,483 + Psest_0873 0.48 -0.8 949,483 + Psest_0873 0.48 -1.5 949,483 + Psest_0873 0.48 -1.4 949,483 + Psest_0873 0.48 +0.0 949,483 + Psest_0873 0.48 -1.2 949,483 + Psest_0873 0.48 -1.2 949,483 + Psest_0873 0.48 -0.7 949,483 + Psest_0873 0.48 -0.2 949,483 + Psest_0873 0.48 -0.9 949,483 + Psest_0873 0.48 -1.0 949,483 + Psest_0873 0.48 +2.0 949,484 - Psest_0873 0.48 -0.8 949,484 - Psest_0873 0.48 -0.9 949,484 - Psest_0873 0.48 +1.6 949,484 - Psest_0873 0.48 -0.2 949,484 - Psest_0873 0.48 -3.2 949,484 - Psest_0873 0.48 +0.7 949,484 - Psest_0873 0.48 +0.8 949,501 + Psest_0873 0.50 -0.9 949,501 + Psest_0873 0.50 -1.0 949,502 - Psest_0873 0.50 -1.0 949,502 - Psest_0873 0.50 -1.5 949,561 - Psest_0873 0.54 -0.8 949,597 + Psest_0873 0.57 +0.3 949,598 - Psest_0873 0.57 -1.7 949,598 - Psest_0873 0.57 -0.8 949,598 - Psest_0873 0.57 -1.0 949,598 - Psest_0873 0.57 -1.3 949,603 + Psest_0873 0.57 +0.0 949,603 + Psest_0873 0.57 -0.9 949,603 + Psest_0873 0.57 -0.1 949,603 + Psest_0873 0.57 +0.6 949,603 + Psest_0873 0.57 -0.0 949,604 - Psest_0873 0.58 -0.7 949,604 - Psest_0873 0.58 -0.3 949,604 - Psest_0873 0.58 +0.9 949,604 - Psest_0873 0.58 -0.9 949,769 + Psest_0873 0.70 +0.0 949,783 + Psest_0873 0.71 -0.0 949,783 + Psest_0873 0.71 -1.0 949,784 - Psest_0873 0.71 -2.9 949,784 - Psest_0873 0.71 -1.0 949,784 - Psest_0873 0.71 -1.4 949,896 + Psest_0873 0.80 -3.1 950,116 - +0.3 950,156 + -0.7 950,156 + -1.8 950,199 + -1.4 950,200 - -1.8 950,200 - -1.6 950,200 - -1.8 950,248 - -1.5 950,252 + -0.6 950,283 + -0.1 950,283 + -1.0 950,283 + -1.8 950,284 - +0.7 950,420 - -0.7 950,592 + Psest_0874 0.15 -2.1 950,592 + Psest_0874 0.15 -0.4 950,592 + Psest_0874 0.15 +0.0 950,592 + Psest_0874 0.15 -1.2 950,592 + Psest_0874 0.15 +2.0 950,592 + Psest_0874 0.15 -1.3 950,592 + Psest_0874 0.15 -1.0 950,592 + Psest_0874 0.15 -0.7 950,592 + Psest_0874 0.15 -0.1 950,592 + Psest_0874 0.15 -1.2 950,592 + Psest_0874 0.15 -1.1 950,592 + Psest_0874 0.15 -1.1 950,593 - Psest_0874 0.16 -0.5 950,593 - Psest_0874 0.16 -1.3 950,593 - Psest_0874 0.16 +0.9 950,593 - Psest_0874 0.16 +0.1 950,593 - Psest_0874 0.16 -0.5 950,593 - Psest_0874 0.16 +0.0 950,593 - Psest_0874 0.16 -1.2 950,610 - Psest_0874 0.16 +1.0 950,685 + Psest_0874 0.20 +0.5 950,685 + Psest_0874 0.20 +0.6 950,686 - Psest_0874 0.20 +0.3 950,686 - Psest_0874 0.20 -0.5 950,756 + Psest_0874 0.24 +0.7 950,756 + Psest_0874 0.24 +0.7 950,907 + Psest_0874 0.31 -1.5 950,907 + Psest_0874 0.31 +1.4 950,907 + Psest_0874 0.31 -0.8 950,907 + Psest_0874 0.31 -0.3 950,907 + Psest_0874 0.31 +0.5 950,907 + Psest_0874 0.31 +0.2 950,907 + Psest_0874 0.31 +0.4 950,907 + Psest_0874 0.31 +0.3 950,907 + Psest_0874 0.31 +0.0 950,907 + Psest_0874 0.31 -0.7 950,907 + Psest_0874 0.31 -3.2 950,907 + Psest_0874 0.31 -0.4 950,907 + Psest_0874 0.31 +0.1 950,907 + Psest_0874 0.31 -0.2 950,907 + Psest_0874 0.31 -1.3 950,907 + Psest_0874 0.31 +0.0 950,907 + Psest_0874 0.31 -0.5 950,907 + Psest_0874 0.31 +0.6 950,908 - Psest_0874 0.31 -2.0 950,908 - Psest_0874 0.31 -2.0 950,908 - Psest_0874 0.31 -0.1 950,908 - Psest_0874 0.31 +0.5 950,908 - -0.5 950,908 - Psest_0874 0.31 +1.9 950,955 + Psest_0874 0.34 +0.0 950,955 + Psest_0874 0.34 -0.9 950,955 + Psest_0874 0.34 -0.2 950,955 + Psest_0874 0.34 -0.8 950,955 + Psest_0874 0.34 -2.1 950,955 + Psest_0874 0.34 +0.0 950,956 - Psest_0874 0.34 -0.4 950,956 - Psest_0874 0.34 -0.7 950,956 - Psest_0874 0.34 -3.0 950,956 - Psest_0874 0.34 +1.2
Or see this region's nucleotide sequence