Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0863

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0862 and Psest_0863 are separated by 252 nucleotidesPsest_0863 and Psest_0864 are separated by 67 nucleotides Psest_0862: Psest_0862 - Glycosidases, at 934,524 to 936,596 _0862 Psest_0863: Psest_0863 - maltose ABC transporter, substrate-binding component MalE (from data), at 936,849 to 938,036 _0863 Psest_0864: Psest_0864 - maltose ABC transporter, permease component 1 (MalF) (from data), at 938,104 to 939,669 _0864 Position (kb) 936 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 936.069 kb on + strand, within Psest_0862at 936.454 kb on + strandat 936.613 kb on - strandat 936.821 kb on + strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.825 kb on - strandat 936.870 kb on - strandat 936.973 kb on - strand, within Psest_0863at 936.974 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.104 kb on - strand, within Psest_0863at 937.104 kb on - strand, within Psest_0863at 937.218 kb on + strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strandat 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.274 kb on + strand, within Psest_0863at 937.274 kb on + strand, within Psest_0863at 937.275 kb on - strand, within Psest_0863at 937.275 kb on - strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.551 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.770 kb on + strand, within Psest_0863at 937.771 kb on - strand, within Psest_0863at 937.771 kb on - strand, within Psest_0863at 937.771 kb on - strand, within Psest_0863at 937.771 kb on - strand, within Psest_0863at 937.835 kb on + strand, within Psest_0863at 937.835 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.842 kb on + strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.843 kb on - strand, within Psest_0863at 937.844 kb on + strand, within Psest_0863at 937.844 kb on + strand, within Psest_0863at 937.845 kb on - strand, within Psest_0863at 937.845 kb on - strand, within Psest_0863at 937.871 kb on + strand, within Psest_0863at 937.871 kb on + strand, within Psest_0863at 938.075 kb on + strandat 938.076 kb on - strandat 938.227 kb on + strandat 938.227 kb on + strandat 938.245 kb on + strandat 938.246 kb on - strandat 938.305 kb on + strand, within Psest_0864at 938.306 kb on - strand, within Psest_0864at 938.306 kb on - strand, within Psest_0864at 938.306 kb on - strand, within Psest_0864at 938.329 kb on + strand, within Psest_0864at 938.329 kb on + strand, within Psest_0864at 938.329 kb on + strand, within Psest_0864at 938.329 kb on + strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.330 kb on - strand, within Psest_0864at 938.342 kb on - strand, within Psest_0864at 938.342 kb on - strand, within Psest_0864at 938.395 kb on + strand, within Psest_0864at 938.395 kb on + strand, within Psest_0864at 938.395 kb on + strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.396 kb on - strand, within Psest_0864at 938.415 kb on + strand, within Psest_0864at 938.422 kb on + strand, within Psest_0864at 938.422 kb on + strand, within Psest_0864at 938.422 kb on + strand, within Psest_0864at 938.422 kb on + strand, within Psest_0864at 938.423 kb on - strand, within Psest_0864at 938.423 kb on - strand, within Psest_0864at 938.482 kb on + strand, within Psest_0864at 938.482 kb on + strand, within Psest_0864at 938.482 kb on + strand, within Psest_0864at 938.573 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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936,069 + Psest_0862 0.75 +0.3
936,454 + -1.0
936,613 - -1.6
936,821 + -0.3
936,822 - -0.4
936,822 - +1.0
936,822 - -0.6
936,822 - -3.1
936,822 - -0.8
936,824 + -0.1
936,824 + +0.6
936,824 + -1.6
936,824 + +0.4
936,825 - +1.0
936,870 - +0.5
936,973 - Psest_0863 0.10 +1.0
936,974 + Psest_0863 0.11 -1.2
937,103 + Psest_0863 0.21 +1.7
937,103 + Psest_0863 0.21 -0.6
937,103 + Psest_0863 0.21 +0.6
937,103 + Psest_0863 0.21 +0.0
937,104 - Psest_0863 0.21 -0.5
937,104 - Psest_0863 0.21 -1.3
937,218 + Psest_0863 0.31 -1.7
937,219 - Psest_0863 0.31 -0.3
937,219 - Psest_0863 0.31 +0.0
937,219 - Psest_0863 0.31 -1.0
937,272 + Psest_0863 0.36 -0.1
937,272 + Psest_0863 0.36 +1.0
937,272 + Psest_0863 0.36 -0.2
937,272 + Psest_0863 0.36 -0.2
937,272 + Psest_0863 0.36 -0.2
937,272 + +1.0
937,272 + Psest_0863 0.36 +0.0
937,272 + Psest_0863 0.36 -1.6
937,272 + Psest_0863 0.36 -0.6
937,272 + Psest_0863 0.36 +1.6
937,272 + Psest_0863 0.36 +0.0
937,272 + Psest_0863 0.36 +0.2
937,272 + Psest_0863 0.36 +0.1
937,273 - Psest_0863 0.36 -0.9
937,273 - Psest_0863 0.36 -0.6
937,273 - Psest_0863 0.36 +1.0
937,273 - Psest_0863 0.36 +1.0
937,274 + Psest_0863 0.36 -0.3
937,274 + Psest_0863 0.36 -0.7
937,275 - Psest_0863 0.36 -0.8
937,275 - Psest_0863 0.36 -1.8
937,374 + Psest_0863 0.44 +0.0
937,374 + Psest_0863 0.44 +0.0
937,374 + Psest_0863 0.44 -1.0
937,375 - Psest_0863 0.44 -0.6
937,375 - Psest_0863 0.44 +0.3
937,375 - Psest_0863 0.44 +0.4
937,386 + Psest_0863 0.45 +0.8
937,386 + Psest_0863 0.45 -1.8
937,386 + Psest_0863 0.45 -0.6
937,386 + Psest_0863 0.45 +0.3
937,386 + Psest_0863 0.45 +0.0
937,386 + Psest_0863 0.45 +0.7
937,386 + Psest_0863 0.45 +0.0
937,387 - Psest_0863 0.45 +0.1
937,387 - Psest_0863 0.45 -0.2
937,387 - Psest_0863 0.45 -0.6
937,387 - Psest_0863 0.45 +0.0
937,387 - Psest_0863 0.45 -0.1
937,387 - Psest_0863 0.45 -1.5
937,387 - Psest_0863 0.45 +0.2
937,387 - Psest_0863 0.45 +0.4
937,387 - Psest_0863 0.45 -0.4
937,387 - Psest_0863 0.45 +0.2
937,387 - Psest_0863 0.45 -0.6
937,387 - Psest_0863 0.45 +1.0
937,387 - Psest_0863 0.45 +0.4
937,551 + Psest_0863 0.59 -0.4
937,770 + Psest_0863 0.78 -1.0
937,770 + Psest_0863 0.78 +0.3
937,770 + Psest_0863 0.78 +0.6
937,770 + Psest_0863 0.78 +0.3
937,770 + Psest_0863 0.78 +0.6
937,770 + Psest_0863 0.78 +0.4
937,770 + Psest_0863 0.78 +0.8
937,770 + Psest_0863 0.78 +1.6
937,771 - Psest_0863 0.78 +0.2
937,771 - Psest_0863 0.78 +0.4
937,771 - Psest_0863 0.78 +0.2
937,771 - Psest_0863 0.78 +1.0
937,835 + Psest_0863 0.83 +0.4
937,835 + Psest_0863 0.83 -1.0
937,842 + Psest_0863 0.84 -0.3
937,842 + Psest_0863 0.84 -0.3
937,842 + Psest_0863 0.84 +0.3
937,842 + Psest_0863 0.84 +2.0
937,842 + Psest_0863 0.84 +1.0
937,842 + Psest_0863 0.84 +1.1
937,842 + Psest_0863 0.84 +0.0
937,842 + Psest_0863 0.84 +1.0
937,842 + Psest_0863 0.84 +0.0
937,842 + Psest_0863 0.84 +0.2
937,842 + Psest_0863 0.84 -0.6
937,842 + Psest_0863 0.84 +0.2
937,842 + Psest_0863 0.84 +3.3
937,842 + Psest_0863 0.84 +0.4
937,842 + Psest_0863 0.84 -0.4
937,842 + Psest_0863 0.84 -0.2
937,842 + Psest_0863 0.84 +0.4
937,842 + Psest_0863 0.84 +0.5
937,842 + Psest_0863 0.84 -0.6
937,842 + Psest_0863 0.84 -1.6
937,843 - Psest_0863 0.84 -1.3
937,843 - Psest_0863 0.84 -0.6
937,843 - Psest_0863 0.84 +0.1
937,843 - Psest_0863 0.84 -0.3
937,843 - Psest_0863 0.84 +0.2
937,843 - Psest_0863 0.84 +1.0
937,843 - Psest_0863 0.84 -1.0
937,843 - Psest_0863 0.84 +1.0
937,843 - Psest_0863 0.84 -1.0
937,843 - Psest_0863 0.84 +1.4
937,843 - Psest_0863 0.84 +0.4
937,843 - Psest_0863 0.84 +0.0
937,843 - Psest_0863 0.84 +0.4
937,843 - Psest_0863 0.84 +1.0
937,843 - Psest_0863 0.84 -1.6
937,843 - Psest_0863 0.84 -1.7
937,843 - Psest_0863 0.84 +0.4
937,843 - Psest_0863 0.84 -1.0
937,843 - Psest_0863 0.84 -1.8
937,843 - Psest_0863 0.84 -0.6
937,843 - Psest_0863 0.84 +0.0
937,844 + Psest_0863 0.84 +1.6
937,844 + Psest_0863 0.84 +2.0
937,845 - Psest_0863 0.84 -0.6
937,845 - Psest_0863 0.84 +0.0
937,871 + Psest_0863 0.86 +0.0
937,871 + Psest_0863 0.86 +1.0
938,075 + -0.3
938,076 - +1.4
938,227 + -1.2
938,227 + -1.7
938,245 + +0.1
938,246 - -0.1
938,305 + Psest_0864 0.13 +1.0
938,306 - Psest_0864 0.13 -0.2
938,306 - Psest_0864 0.13 +1.0
938,306 - Psest_0864 0.13 +0.0
938,329 + Psest_0864 0.14 -1.7
938,329 + Psest_0864 0.14 -0.6
938,329 + Psest_0864 0.14 -1.8
938,329 + Psest_0864 0.14 -1.5
938,330 - Psest_0864 0.14 -0.1
938,330 - Psest_0864 0.14 -0.1
938,330 - Psest_0864 0.14 -1.4
938,330 - Psest_0864 0.14 +1.0
938,330 - Psest_0864 0.14 +0.5
938,330 - Psest_0864 0.14 +0.0
938,342 - Psest_0864 0.15 -0.1
938,342 - Psest_0864 0.15 -0.6
938,395 + Psest_0864 0.19 -0.6
938,395 + Psest_0864 0.19 +0.0
938,395 + Psest_0864 0.19 +0.7
938,396 - Psest_0864 0.19 -0.3
938,396 - Psest_0864 0.19 -0.6
938,396 - Psest_0864 0.19 -1.0
938,396 - Psest_0864 0.19 -0.6
938,396 - Psest_0864 0.19 -1.6
938,396 - Psest_0864 0.19 +0.0
938,396 - Psest_0864 0.19 +0.0
938,396 - Psest_0864 0.19 +0.0
938,396 - Psest_0864 0.19 +1.7
938,415 + Psest_0864 0.20 -0.5
938,422 + Psest_0864 0.20 -0.3
938,422 + Psest_0864 0.20 +0.6
938,422 + Psest_0864 0.20 +1.0
938,422 + Psest_0864 0.20 +0.6
938,423 - Psest_0864 0.20 +1.0
938,423 - Psest_0864 0.20 +1.0
938,482 + Psest_0864 0.24 +2.3
938,482 + Psest_0864 0.24 +0.0
938,482 + Psest_0864 0.24 -1.0
938,573 + Psest_0864 0.30 -1.1
938,857 + Psest_0864 0.48 +0.0
938,857 + Psest_0864 0.48 +0.4
938,857 + Psest_0864 0.48 +0.6
938,857 + Psest_0864 0.48 +1.0
938,857 + Psest_0864 0.48 +0.1
938,857 + Psest_0864 0.48 -0.2
938,857 + Psest_0864 0.48 +0.2
938,858 - Psest_0864 0.48 -0.4
938,858 - Psest_0864 0.48 -1.6
938,858 - Psest_0864 0.48 +1.2
938,858 - Psest_0864 0.48 -0.5
938,858 - Psest_0864 0.48 +1.7

Or see this region's nucleotide sequence