Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0851 and Psest_0852 are separated by 171 nucleotides Psest_0852 and Psest_0853 overlap by 14 nucleotides Psest_0853 and Psest_0854 are separated by 18 nucleotides
Psest_0851: Psest_0851 - Transcriptional regulators, at 921,490 to 922,359
_0851
Psest_0852: Psest_0852 - glucose-6-phosphate 1-dehydrogenase, at 922,531 to 924,000
_0852
Psest_0853: Psest_0853 - 6-phosphogluconolactonase, at 923,987 to 924,700
_0853
Psest_0854: Psest_0854 - Entner-Doudoroff aldolase, at 924,719 to 925,456
_0854
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 921.542 kb on - strand at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.647 kb on + strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.648 kb on - strand, within Psest_0851 at 921.797 kb on + strand, within Psest_0851 at 922.067 kb on + strand, within Psest_0851 at 922.067 kb on + strand, within Psest_0851 at 922.068 kb on - strand, within Psest_0851 at 922.068 kb on - strand, within Psest_0851 at 922.348 kb on + strand at 922.399 kb on + strand at 922.399 kb on + strand at 922.399 kb on + strand at 922.542 kb on - strand at 922.542 kb on - strand at 922.618 kb on + strand at 922.619 kb on - strand at 922.793 kb on - strand, within Psest_0852 at 922.897 kb on + strand, within Psest_0852 at 923.041 kb on + strand, within Psest_0852 at 923.041 kb on + strand, within Psest_0852 at 923.056 kb on + strand, within Psest_0852 at 923.387 kb on - strand, within Psest_0852 at 923.426 kb on - strand, within Psest_0852 at 923.524 kb on + strand, within Psest_0852 at 923.524 kb on + strand, within Psest_0852 at 923.524 kb on + strand, within Psest_0852 at 923.596 kb on + strand, within Psest_0852 at 923.596 kb on + strand, within Psest_0852 at 923.597 kb on - strand, within Psest_0852 at 923.758 kb on + strand, within Psest_0852 at 923.759 kb on - strand, within Psest_0852 at 923.855 kb on - strand at 923.920 kb on + strand at 923.986 kb on + strand at 923.986 kb on + strand at 923.998 kb on + strand at 924.321 kb on - strand, within Psest_0853 at 924.370 kb on - strand, within Psest_0853 at 924.396 kb on + strand, within Psest_0853 at 924.396 kb on + strand, within Psest_0853 at 924.396 kb on + strand, within Psest_0853 at 924.396 kb on + strand, within Psest_0853 at 924.396 kb on + strand, within Psest_0853 at 924.397 kb on - strand, within Psest_0853 at 924.397 kb on - strand, within Psest_0853 at 924.397 kb on - strand, within Psest_0853 at 924.397 kb on - strand, within Psest_0853 at 924.397 kb on - strand, within Psest_0853 at 924.686 kb on + strand at 924.687 kb on - strand at 924.687 kb on - strand at 924.727 kb on + strand at 924.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 921,542 - +1.0 921,647 + Psest_0851 0.18 -1.0 921,647 + Psest_0851 0.18 -2.9 921,647 + Psest_0851 0.18 -1.0 921,647 + Psest_0851 0.18 -2.0 921,647 + Psest_0851 0.18 -1.8 921,647 + Psest_0851 0.18 +0.2 921,647 + Psest_0851 0.18 +1.0 921,647 + Psest_0851 0.18 -2.2 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 +1.0 921,647 + Psest_0851 0.18 -0.6 921,647 + Psest_0851 0.18 +1.0 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 +1.0 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 -1.3 921,647 + Psest_0851 0.18 -0.8 921,647 + Psest_0851 0.18 +1.0 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 -1.6 921,647 + Psest_0851 0.18 +2.0 921,647 + Psest_0851 0.18 -2.3 921,648 - Psest_0851 0.18 +1.0 921,648 - Psest_0851 0.18 -0.5 921,648 - Psest_0851 0.18 -0.6 921,648 - Psest_0851 0.18 -0.4 921,648 - Psest_0851 0.18 -0.8 921,648 - Psest_0851 0.18 -0.5 921,648 - Psest_0851 0.18 -0.7 921,648 - Psest_0851 0.18 -0.9 921,648 - Psest_0851 0.18 -1.2 921,648 - Psest_0851 0.18 -1.9 921,648 - Psest_0851 0.18 -1.2 921,648 - Psest_0851 0.18 -0.8 921,648 - Psest_0851 0.18 -1.0 921,648 - Psest_0851 0.18 -1.3 921,648 - Psest_0851 0.18 +0.6 921,648 - Psest_0851 0.18 -0.6 921,648 - Psest_0851 0.18 +0.4 921,648 - Psest_0851 0.18 -0.0 921,648 - Psest_0851 0.18 -1.8 921,648 - Psest_0851 0.18 -0.5 921,797 + Psest_0851 0.35 -0.3 922,067 + Psest_0851 0.66 -0.1 922,067 + Psest_0851 0.66 -0.0 922,068 - Psest_0851 0.66 -0.0 922,068 - Psest_0851 0.66 -0.5 922,348 + +3.5 922,399 + -1.3 922,399 + +1.0 922,399 + +1.6 922,542 - -0.7 922,542 - -0.1 922,618 + +0.4 922,619 - +0.4 922,793 - Psest_0852 0.18 +0.2 922,897 + Psest_0852 0.25 -0.0 923,041 + Psest_0852 0.35 -2.6 923,041 + Psest_0852 0.35 -0.4 923,056 + Psest_0852 0.36 +1.0 923,387 - Psest_0852 0.58 -1.8 923,426 - Psest_0852 0.61 +0.2 923,524 + Psest_0852 0.68 +1.0 923,524 + Psest_0852 0.68 +1.0 923,524 + Psest_0852 0.68 -1.3 923,596 + Psest_0852 0.72 +0.4 923,596 + Psest_0852 0.72 +0.3 923,597 - Psest_0852 0.73 +1.4 923,758 + Psest_0852 0.83 -0.0 923,759 - Psest_0852 0.84 +1.6 923,855 - -0.6 923,920 + +0.3 923,986 + +0.3 923,986 + +1.0 923,998 + +0.4 924,321 - Psest_0853 0.47 +1.3 924,370 - Psest_0853 0.54 +0.4 924,396 + Psest_0853 0.57 -0.0 924,396 + Psest_0853 0.57 -1.3 924,396 + Psest_0853 0.57 +0.7 924,396 + Psest_0853 0.57 -1.0 924,396 + Psest_0853 0.57 +1.0 924,397 - Psest_0853 0.57 +1.0 924,397 - Psest_0853 0.57 -1.3 924,397 - Psest_0853 0.57 +0.4 924,397 - Psest_0853 0.57 +1.1 924,397 - Psest_0853 0.57 -1.0 924,686 + +0.6 924,687 - +0.4 924,687 - +0.4 924,727 + -0.6 924,728 - +1.0
Or see this region's nucleotide sequence