Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0815 and Psest_0816 are separated by 69 nucleotides Psest_0816 and Psest_0817 are separated by 49 nucleotides Psest_0817 and Psest_0818 are separated by 24 nucleotides Psest_0818 and Psest_0819 are separated by 146 nucleotides Psest_0819 and Psest_0820 are separated by 18 nucleotides Psest_0820 and Psest_0821 overlap by 4 nucleotides
Psest_0815: Psest_0815 - Cytochrome c, mono- and diheme variants, at 889,993 to 891,675
_0815
Psest_0816: Psest_0816 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 891,745 to 892,350
_0816
Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275
_0817
Psest_0818: Psest_0818 - hypothetical protein, at 893,300 to 893,446
_0818
Psest_0819: Psest_0819 - Cytochrome c551/c552, at 893,593 to 893,907
_0819
Psest_0820: Psest_0820 - hypothetical protein, at 893,926 to 894,267
_0820
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.571 kb on + strand at 891.572 kb on - strand at 891.661 kb on + strand at 891.661 kb on + strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.671 kb on - strand at 891.673 kb on + strand at 891.674 kb on - strand at 891.697 kb on - strand at 891.959 kb on - strand, within Psest_0816 at 891.959 kb on - strand, within Psest_0816 at 892.326 kb on + strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.353 kb on + strand at 892.354 kb on - strand at 892.462 kb on + strand at 892.743 kb on - strand, within Psest_0817 at 892.743 kb on - strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.392 kb on - strand, within Psest_0818 at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.586 kb on - strand at 893.586 kb on - strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 891,571 + +1.5 891,572 - +1.3 891,661 + +1.0 891,661 + +0.0 891,662 - +1.4 891,662 - +1.7 891,662 - +0.2 891,662 - +0.6 891,662 - -1.6 891,662 - +1.5 891,671 - +1.4 891,673 + +1.1 891,674 - +0.4 891,697 - +0.2 891,959 - Psest_0816 0.35 +0.1 891,959 - Psest_0816 0.35 -2.2 892,326 + +1.1 892,327 - -0.5 892,327 - +0.7 892,327 - +1.1 892,327 - -0.9 892,353 + +0.5 892,354 - -0.0 892,462 + +1.0 892,743 - Psest_0817 0.39 -2.2 892,743 - Psest_0817 0.39 -0.6 892,820 + Psest_0817 0.48 +1.5 892,820 + Psest_0817 0.48 -1.0 892,820 + Psest_0817 0.48 +1.0 892,820 + Psest_0817 0.48 +0.5 892,820 + Psest_0817 0.48 +1.0 892,820 + Psest_0817 0.48 -0.6 892,821 - Psest_0817 0.48 -0.4 892,821 - Psest_0817 0.48 -0.7 892,821 - Psest_0817 0.48 -0.0 892,931 + Psest_0817 0.61 -0.5 892,931 + Psest_0817 0.61 +0.8 892,931 + Psest_0817 0.61 +0.6 892,931 + Psest_0817 0.61 +0.5 892,931 + Psest_0817 0.61 +2.5 892,932 - Psest_0817 0.61 -1.6 892,932 - Psest_0817 0.61 -1.4 892,932 - Psest_0817 0.61 -0.5 892,932 - Psest_0817 0.61 -0.5 892,964 + Psest_0817 0.64 -0.3 892,964 + Psest_0817 0.64 +1.5 892,965 - Psest_0817 0.64 -0.0 892,965 - Psest_0817 0.64 -0.5 892,967 + Psest_0817 0.65 +0.3 892,967 + Psest_0817 0.65 +0.4 892,967 + Psest_0817 0.65 +0.4 892,968 - Psest_0817 0.65 -0.1 892,968 - Psest_0817 0.65 -2.0 893,086 + Psest_0817 0.78 +0.7 893,086 + Psest_0817 0.78 +0.2 893,087 - Psest_0817 0.78 -1.4 893,087 - Psest_0817 0.78 -1.1 893,159 + Psest_0817 0.87 +0.7 893,159 + Psest_0817 0.87 +0.2 893,159 + Psest_0817 0.87 +1.0 893,392 - Psest_0818 0.63 +0.4 893,585 + -0.1 893,585 + -0.4 893,585 + +0.4 893,585 + +1.3 893,585 + -0.7 893,586 - +0.3 893,586 - -0.5 893,591 + -0.3 893,591 + -0.3 893,591 + -2.4 893,591 + -0.9 893,591 + +0.7 893,592 - -0.7 893,592 - -0.6 893,592 - +1.0 893,905 + +0.4 893,905 + +0.9 893,905 + -0.4 893,905 + -3.3 893,905 + -0.0 893,905 + -0.4 893,906 - -0.6 893,906 - +0.2 893,906 - -1.7 893,906 - -0.6 893,906 - -2.4 893,906 - +0.2 893,906 - -1.4 894,047 + Psest_0820 0.35 -1.2 894,047 + Psest_0820 0.35 -0.5 894,047 + Psest_0820 0.35 +2.0 894,048 - Psest_0820 0.36 -0.9 894,048 - Psest_0820 0.36 +0.3 894,048 - Psest_0820 0.36 +1.0 894,048 - Psest_0820 0.36 +0.5 894,048 - Psest_0820 0.36 +0.0
Or see this region's nucleotide sequence