Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0738 and Psest_0739 are separated by 148 nucleotides Psest_0739 and Psest_0740 are separated by 4 nucleotides Psest_0740 and Psest_0741 are separated by 86 nucleotides
Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090
_0738
Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430
_0739
Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199
_0740
Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458
_0741
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.510 kb on - strand, within Psest_0738 at 812.696 kb on + strand, within Psest_0738 at 812.890 kb on + strand at 812.891 kb on - strand at 812.956 kb on - strand at 813.072 kb on + strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.940 kb on + strand, within Psest_0740 at 813.940 kb on + strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 814.145 kb on - strand at 814.173 kb on + strand at 814.174 kb on - strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.308 kb on + strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.427 kb on + strand, within Psest_0741 at 814.427 kb on + strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.460 kb on + strand, within Psest_0741 at 814.832 kb on + strand, within Psest_0741 at 814.833 kb on - strand, within Psest_0741 at 814.880 kb on + strand, within Psest_0741 at 814.881 kb on - strand, within Psest_0741 at 814.948 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 812,483 + Psest_0738 0.74 +1.4 812,483 + Psest_0738 0.74 -1.0 812,483 + Psest_0738 0.74 +0.1 812,484 - Psest_0738 0.74 +1.6 812,484 - Psest_0738 0.74 -0.5 812,484 - Psest_0738 0.74 -0.1 812,509 + Psest_0738 0.76 +0.3 812,509 + Psest_0738 0.76 -1.1 812,509 + Psest_0738 0.76 -1.3 812,510 - Psest_0738 0.76 -0.5 812,696 + Psest_0738 0.83 -0.5 812,890 + -1.0 812,891 - +0.9 812,956 - +1.6 813,072 + +2.6 813,247 - +2.6 813,247 - -0.3 813,247 - -0.5 813,940 + Psest_0740 0.66 +2.2 813,940 + Psest_0740 0.66 +3.7 813,941 - Psest_0740 0.66 +4.0 813,941 - Psest_0740 0.66 +2.9 814,145 - +0.6 814,173 + +0.5 814,174 - -1.9 814,187 + -2.4 814,187 + +1.0 814,187 + +0.0 814,187 + +1.4 814,187 + +0.3 814,187 + -0.1 814,187 + +1.3 814,187 + +0.0 814,187 + -1.3 814,187 + +2.5 814,187 + -0.7 814,187 + +0.0 814,187 + +0.4 814,187 + +1.0 814,188 - -2.0 814,188 - -2.6 814,188 - +0.0 814,188 - -1.0 814,188 - +0.0 814,192 - -0.5 814,192 - -1.5 814,192 - -2.3 814,192 - -0.5 814,308 + -1.3 814,309 - -2.3 814,309 - -0.4 814,309 - -0.5 814,352 + +2.0 814,352 + -0.0 814,352 + -0.0 814,352 + +1.7 814,352 + +0.2 814,352 + +0.1 814,352 + -0.1 814,352 + +0.5 814,352 + -1.1 814,352 + +0.5 814,352 + -1.2 814,352 + +1.2 814,352 + -0.3 814,352 + +0.9 814,352 + +0.6 814,352 + -3.1 814,353 - +1.0 814,353 - -0.8 814,353 - -1.1 814,353 - -1.3 814,353 - -1.9 814,353 - -1.3 814,353 - -0.3 814,353 - +0.4 814,353 - -0.2 814,353 - -0.3 814,353 - +0.3 814,353 - -0.5 814,353 - +0.6 814,353 - +0.2 814,353 - -1.7 814,353 - -0.8 814,353 - +0.6 814,353 - +0.0 814,353 - +0.6 814,353 - -0.1 814,353 - -1.2 814,427 + Psest_0741 0.12 +1.4 814,427 + Psest_0741 0.12 -0.2 814,428 - Psest_0741 0.12 +0.3 814,428 - Psest_0741 0.12 -1.4 814,460 + Psest_0741 0.15 +0.3 814,832 + Psest_0741 0.47 -1.5 814,833 - Psest_0741 0.47 -1.4 814,880 + Psest_0741 0.51 +2.0 814,881 - Psest_0741 0.51 +0.0 814,948 + Psest_0741 0.56 +1.0 814,958 + Psest_0741 0.57 +0.0 814,958 + Psest_0741 0.57 -0.2 814,959 - Psest_0741 0.57 -1.2 814,959 - Psest_0741 0.57 +0.0 814,959 - Psest_0741 0.57 -1.1 814,994 + Psest_0741 0.60 +0.3 814,994 + Psest_0741 0.60 -1.1
Or see this region's nucleotide sequence