Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0732 and Psest_0733 overlap by 4 nucleotides Psest_0733 and Psest_0734 are separated by 4 nucleotides
Psest_0732: Psest_0732 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 801,780 to 803,252
_0732
Psest_0733: Psest_0733 - Cation/multidrug efflux pump, at 803,249 to 806,293
_0733
Psest_0734: Psest_0734 - RND family efflux transporter, MFP subunit, at 806,298 to 807,377
_0734
Position (kb) 803
804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2 at 803.031 kb on + strand, within Psest_0732 at 803.031 kb on + strand, within Psest_0732 at 803.032 kb on - strand, within Psest_0732 at 803.032 kb on - strand, within Psest_0732 at 803.402 kb on + strand at 803.478 kb on - strand at 803.478 kb on - strand at 803.784 kb on + strand, within Psest_0733 at 803.784 kb on + strand, within Psest_0733 at 803.785 kb on - strand, within Psest_0733 at 803.785 kb on - strand, within Psest_0733 at 803.785 kb on - strand, within Psest_0733 at 803.785 kb on - strand, within Psest_0733 at 803.964 kb on + strand, within Psest_0733 at 803.965 kb on - strand, within Psest_0733 at 804.221 kb on + strand, within Psest_0733 at 804.221 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.480 kb on + strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.481 kb on - strand, within Psest_0733 at 804.556 kb on - strand, within Psest_0733 at 804.556 kb on - strand, within Psest_0733 at 804.595 kb on + strand, within Psest_0733 at 804.596 kb on - strand, within Psest_0733 at 804.627 kb on + strand, within Psest_0733 at 804.627 kb on + strand, within Psest_0733 at 804.627 kb on + strand, within Psest_0733 at 804.628 kb on - strand, within Psest_0733 at 804.628 kb on - strand, within Psest_0733 at 804.774 kb on + strand, within Psest_0733 at 804.774 kb on + strand, within Psest_0733 at 804.789 kb on + strand, within Psest_0733 at 804.834 kb on + strand, within Psest_0733 at 804.884 kb on + strand, within Psest_0733 at 805.332 kb on + strand, within Psest_0733 at 805.332 kb on + strand, within Psest_0733 at 805.333 kb on - strand, within Psest_0733 at 805.399 kb on + strand, within Psest_0733 at 805.400 kb on - strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.500 kb on + strand, within Psest_0733 at 805.866 kb on + strand, within Psest_0733 at 805.878 kb on + strand, within Psest_0733 at 805.879 kb on - strand, within Psest_0733 at 806.240 kb on + strand at 806.278 kb on - strand at 806.278 kb on - strand at 806.430 kb on + strand, within Psest_0734 at 806.633 kb on - strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 806.674 kb on + strand, within Psest_0734 at 807.119 kb on + strand, within Psest_0734 at 807.120 kb on - strand, within Psest_0734
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 803,031 + Psest_0732 0.85 -1.0 803,031 + Psest_0732 0.85 -0.8 803,032 - Psest_0732 0.85 -1.8 803,032 - Psest_0732 0.85 +0.3 803,402 + +0.0 803,478 - +0.5 803,478 - +1.0 803,784 + Psest_0733 0.18 -2.0 803,784 + Psest_0733 0.18 +0.6 803,785 - Psest_0733 0.18 -0.3 803,785 - Psest_0733 0.18 -0.5 803,785 - Psest_0733 0.18 +0.5 803,785 - Psest_0733 0.18 -0.3 803,964 + Psest_0733 0.23 +2.0 803,965 - Psest_0733 0.24 +1.0 804,221 + Psest_0733 0.32 +2.0 804,221 + Psest_0733 0.32 -0.4 804,480 + Psest_0733 0.40 +0.6 804,480 + Psest_0733 0.40 -0.1 804,480 + Psest_0733 0.40 +2.6 804,480 + Psest_0733 0.40 +1.0 804,480 + Psest_0733 0.40 +0.9 804,480 + Psest_0733 0.40 -0.4 804,480 + Psest_0733 0.40 -0.5 804,480 + Psest_0733 0.40 +1.0 804,480 + Psest_0733 0.40 -0.4 804,480 + Psest_0733 0.40 -1.3 804,480 + Psest_0733 0.40 +0.5 804,481 - Psest_0733 0.40 +0.8 804,481 - Psest_0733 0.40 +0.5 804,481 - Psest_0733 0.40 +2.6 804,481 - Psest_0733 0.40 +2.6 804,481 - Psest_0733 0.40 +2.4 804,481 - Psest_0733 0.40 +1.6 804,481 - Psest_0733 0.40 +0.0 804,481 - Psest_0733 0.40 +0.0 804,556 - Psest_0733 0.43 -0.4 804,556 - Psest_0733 0.43 -0.8 804,595 + Psest_0733 0.44 +0.0 804,596 - Psest_0733 0.44 +0.0 804,627 + Psest_0733 0.45 +0.5 804,627 + Psest_0733 0.45 +0.5 804,627 + Psest_0733 0.45 +0.9 804,628 - Psest_0733 0.45 +1.0 804,628 - Psest_0733 0.45 -2.5 804,774 + Psest_0733 0.50 -0.4 804,774 + Psest_0733 0.50 +2.0 804,789 + Psest_0733 0.51 +0.6 804,834 + Psest_0733 0.52 +1.0 804,884 + Psest_0733 0.54 +1.0 805,332 + Psest_0733 0.68 +0.6 805,332 + Psest_0733 0.68 -0.8 805,333 - Psest_0733 0.68 +0.0 805,399 + Psest_0733 0.71 +0.3 805,400 - Psest_0733 0.71 -1.0 805,500 + Psest_0733 0.74 +0.8 805,500 + Psest_0733 0.74 +2.0 805,500 + Psest_0733 0.74 +0.3 805,866 + Psest_0733 0.86 -0.5 805,878 + Psest_0733 0.86 +0.7 805,879 - Psest_0733 0.86 -0.5 806,240 + -2.3 806,278 - +0.0 806,278 - -0.3 806,430 + Psest_0734 0.12 +1.0 806,633 - Psest_0734 0.31 +0.0 806,674 + Psest_0734 0.35 -0.1 806,674 + Psest_0734 0.35 +1.0 806,674 + Psest_0734 0.35 +0.6 806,674 + Psest_0734 0.35 +2.0 807,119 + Psest_0734 0.76 -1.0 807,120 - Psest_0734 0.76 -1.1
Or see this region's nucleotide sequence