Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0708 and Psest_0709 are separated by 52 nucleotides Psest_0709 and Psest_0710 overlap by 4 nucleotides Psest_0710 and Psest_0711 are separated by 166 nucleotides
Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272
_0708
Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452
_0709
Psest_0710: Psest_0710 - uncharacterized protein, YfiH family, at 779,449 to 780,186
_0710
Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917
_0711
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.343 kb on + strand at 777.409 kb on + strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.478 kb on - strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.730 kb on - strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.749 kb on - strand, within Psest_0709 at 778.825 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.182 kb on + strand, within Psest_0709 at 779.183 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709 at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.303 kb on - strand at 780.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 777,343 + -1.3 777,409 + Psest_0708 0.13 -2.5 777,555 - Psest_0708 0.27 -0.7 777,555 - Psest_0708 0.27 +0.0 778,467 + Psest_0709 0.13 +0.2 778,467 + Psest_0709 0.13 +1.8 778,467 + Psest_0709 0.13 +1.0 778,467 + Psest_0709 0.13 -0.8 778,468 - Psest_0709 0.13 -0.5 778,468 - Psest_0709 0.13 -0.8 778,468 - Psest_0709 0.13 -1.7 778,477 + Psest_0709 0.13 -0.1 778,477 + Psest_0709 0.13 +2.1 778,478 - Psest_0709 0.14 +0.2 778,629 + Psest_0709 0.27 +1.8 778,629 + Psest_0709 0.27 +0.7 778,629 + Psest_0709 0.27 +2.0 778,629 + Psest_0709 0.27 +2.6 778,630 - Psest_0709 0.27 +1.0 778,630 - Psest_0709 0.27 +0.4 778,630 - Psest_0709 0.27 +0.1 778,730 - Psest_0709 0.36 +0.5 778,748 + Psest_0709 0.38 +1.1 778,748 + Psest_0709 0.38 +1.6 778,748 + Psest_0709 0.38 +2.0 778,749 - Psest_0709 0.38 +0.6 778,825 + Psest_0709 0.44 +1.9 778,997 + Psest_0709 0.60 +1.6 778,997 + Psest_0709 0.60 +1.4 778,997 + Psest_0709 0.60 +1.5 778,997 + Psest_0709 0.60 +0.1 778,998 - Psest_0709 0.60 +1.4 778,998 - Psest_0709 0.60 +1.0 778,998 - Psest_0709 0.60 +2.5 778,998 - Psest_0709 0.60 +1.9 778,998 - Psest_0709 0.60 +1.2 778,998 - Psest_0709 0.60 +1.0 779,080 + Psest_0709 0.67 +1.4 779,080 + Psest_0709 0.67 +2.3 779,080 + Psest_0709 0.67 +2.7 779,182 + Psest_0709 0.76 +1.3 779,183 - Psest_0709 0.76 +0.4 779,244 - Psest_0709 0.81 +1.5 779,244 - Psest_0709 0.81 +1.6 780,282 + +0.0 780,282 + +1.5 780,282 + -2.1 780,282 + +1.3 780,282 + -1.0 780,282 + -0.7 780,282 + +0.3 780,282 + +2.3 780,282 + +0.0 780,282 + +1.5 780,282 + +0.2 780,282 + +0.8 780,282 + +0.7 780,282 + +1.2 780,283 - -0.3 780,283 - -0.3 780,283 - +0.0 780,283 - -0.3 780,283 - -2.8 780,283 - +0.0 780,283 - -0.3 780,283 - +0.1 780,283 - +0.6 780,283 - -0.2 780,283 - -0.7 780,283 - +0.0 780,283 - -3.5 780,283 - +1.3 780,283 - -1.1 780,283 - +0.7 780,302 + -0.3 780,302 + +2.2 780,302 + -1.0 780,302 + +0.2 780,302 + +1.2 780,303 - -0.8 780,334 + -1.1
Or see this region's nucleotide sequence