Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0704

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0703 and Psest_0704 are separated by 217 nucleotidesPsest_0704 and Psest_0705 are separated by 40 nucleotides Psest_0703: Psest_0703 - diguanylate cyclase (GGDEF) domain, at 770,972 to 772,567 _0703 Psest_0704: Psest_0704 - Uncharacterized protein conserved in bacteria, at 772,785 to 773,843 _0704 Psest_0705: Psest_0705 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 773,884 to 775,278 _0705 Position (kb) 772 773 774Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 772.035 kb on - strand, within Psest_0703at 772.035 kb on - strand, within Psest_0703at 772.166 kb on + strand, within Psest_0703at 772.205 kb on - strand, within Psest_0703at 772.205 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.209 kb on - strand, within Psest_0703at 772.209 kb on - strand, within Psest_0703at 772.284 kb on + strand, within Psest_0703at 772.284 kb on + strand, within Psest_0703at 772.456 kb on - strandat 772.706 kb on + strandat 772.706 kb on + strandat 772.707 kb on - strandat 772.707 kb on - strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.709 kb on - strandat 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.952 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.784 kb on + strandat 773.784 kb on + strandat 773.784 kb on + strandat 773.784 kb on + strandat 773.785 kb on - strandat 773.785 kb on - strandat 774.132 kb on + strand, within Psest_0705at 774.132 kb on + strand, within Psest_0705at 774.132 kb on + strand, within Psest_0705at 774.133 kb on - strand, within Psest_0705at 774.133 kb on - strand, within Psest_0705at 774.134 kb on + strand, within Psest_0705at 774.135 kb on - strand, within Psest_0705at 774.135 kb on - strand, within Psest_0705at 774.186 kb on - strand, within Psest_0705at 774.186 kb on - strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.741 kb on + strand, within Psest_0705at 774.742 kb on - strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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772,035 - Psest_0703 0.67 +0.6
772,035 - Psest_0703 0.67 -0.0
772,166 + Psest_0703 0.75 +0.8
772,205 - Psest_0703 0.77 +0.8
772,205 - Psest_0703 0.77 -0.3
772,207 - Psest_0703 0.77 -0.7
772,207 - Psest_0703 0.77 +2.3
772,207 - Psest_0703 0.77 -2.0
772,207 - Psest_0703 0.77 -0.5
772,207 - Psest_0703 0.77 +0.4
772,207 - Psest_0703 0.77 -1.7
772,207 - Psest_0703 0.77 +1.7
772,207 - Psest_0703 0.77 +1.6
772,207 - Psest_0703 0.77 -0.8
772,207 - Psest_0703 0.77 -0.3
772,207 - Psest_0703 0.77 +1.4
772,207 - Psest_0703 0.77 -1.4
772,207 - Psest_0703 0.77 -1.5
772,207 - Psest_0703 0.77 -2.7
772,207 - Psest_0703 0.77 -0.8
772,209 - Psest_0703 0.78 -0.3
772,209 - Psest_0703 0.78 +0.0
772,284 + Psest_0703 0.82 -1.7
772,284 + Psest_0703 0.82 -1.3
772,456 - -0.2
772,706 + +1.2
772,706 + +1.4
772,707 - -0.3
772,707 - -3.6
772,708 + +0.9
772,708 + +0.3
772,708 + +0.7
772,708 + +0.5
772,708 + +0.7
772,709 - -1.4
772,902 + Psest_0704 0.11 +0.4
772,902 + Psest_0704 0.11 +0.7
772,902 + Psest_0704 0.11 +0.7
772,952 + Psest_0704 0.16 +1.0
773,370 + Psest_0704 0.55 +0.5
773,370 + Psest_0704 0.55 +0.6
773,370 + Psest_0704 0.55 +0.7
773,370 + Psest_0704 0.55 -0.1
773,370 + Psest_0704 0.55 -0.3
773,370 + Psest_0704 0.55 +0.5
773,370 + Psest_0704 0.55 +0.2
773,370 + Psest_0704 0.55 +0.7
773,370 + Psest_0704 0.55 +1.6
773,370 + Psest_0704 0.55 +0.8
773,371 - Psest_0704 0.55 +1.9
773,371 - Psest_0704 0.55 +0.4
773,371 - Psest_0704 0.55 +0.6
773,371 - Psest_0704 0.55 +1.6
773,784 + -0.5
773,784 + -0.1
773,784 + +2.3
773,784 + +1.0
773,785 - -1.8
773,785 - +0.4
774,132 + Psest_0705 0.18 -0.8
774,132 + Psest_0705 0.18 -0.8
774,132 + Psest_0705 0.18 -0.7
774,133 - Psest_0705 0.18 +0.2
774,133 - Psest_0705 0.18 -1.8
774,134 + Psest_0705 0.18 -1.7
774,135 - Psest_0705 0.18 -0.5
774,135 - Psest_0705 0.18 -0.8
774,186 - Psest_0705 0.22 -2.3
774,186 - Psest_0705 0.22 -1.9
774,344 + Psest_0705 0.33 -1.2
774,344 + Psest_0705 0.33 -2.5
774,344 + Psest_0705 0.33 -2.5
774,741 + Psest_0705 0.61 -2.1
774,742 - Psest_0705 0.62 -0.3
774,743 + Psest_0705 0.62 -2.8
774,743 + Psest_0705 0.62 -0.4
774,743 + Psest_0705 0.62 -1.5
774,743 + Psest_0705 0.62 +0.0
774,743 + Psest_0705 0.62 +0.3
774,743 + Psest_0705 0.62 -1.1
774,743 + Psest_0705 0.62 -0.7
774,743 + Psest_0705 0.62 -0.5
774,743 + Psest_0705 0.62 -3.2
774,743 + Psest_0705 0.62 -1.9
774,743 + Psest_0705 0.62 -1.0
774,744 - Psest_0705 0.62 -1.9
774,744 - Psest_0705 0.62 +0.5
774,744 - Psest_0705 0.62 -2.8
774,744 - Psest_0705 0.62 -0.3
774,744 - Psest_0705 0.62 -1.8
774,744 - Psest_0705 0.62 -1.5
774,744 - Psest_0705 0.62 +0.3
774,744 - Psest_0705 0.62 -1.5

Or see this region's nucleotide sequence