Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0702

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0701 and Psest_0702 are separated by 51 nucleotidesPsest_0702 and Psest_0703 are separated by 140 nucleotides Psest_0701: Psest_0701 - uncharacterized radical SAM protein YgiQ, at 766,539 to 768,818 _0701 Psest_0702: Psest_0702 - Methyl-accepting chemotaxis protein, at 768,870 to 770,831 _0702 Psest_0703: Psest_0703 - diguanylate cyclase (GGDEF) domain, at 770,972 to 772,567 _0703 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 767.909 kb on - strand, within Psest_0701at 767.964 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.051 kb on + strand, within Psest_0701at 768.088 kb on - strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.159 kb on + strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.160 kb on - strand, within Psest_0701at 768.189 kb on + strand, within Psest_0701at 768.189 kb on + strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.190 kb on - strand, within Psest_0701at 768.216 kb on + strand, within Psest_0701at 768.216 kb on + strand, within Psest_0701at 768.228 kb on + strand, within Psest_0701at 768.228 kb on + strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.229 kb on - strand, within Psest_0701at 768.331 kb on - strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.363 kb on + strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.364 kb on - strand, within Psest_0701at 768.390 kb on - strand, within Psest_0701at 768.399 kb on + strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.400 kb on - strand, within Psest_0701at 768.515 kb on + strand, within Psest_0701at 768.839 kb on - strandat 768.839 kb on - strandat 768.953 kb on + strandat 768.953 kb on + strandat 769.723 kb on + strand, within Psest_0702at 769.723 kb on + strand, within Psest_0702at 769.724 kb on - strand, within Psest_0702at 769.724 kb on - strand, within Psest_0702at 770.378 kb on - strand, within Psest_0702at 770.442 kb on + strand, within Psest_0702at 770.566 kb on - strand, within Psest_0702at 770.627 kb on - strand, within Psest_0702at 770.653 kb on + strandat 770.654 kb on - strandat 770.654 kb on - strandat 770.726 kb on - strandat 771.044 kb on + strandat 771.045 kb on - strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.197 kb on + strand, within Psest_0703at 771.429 kb on + strand, within Psest_0703at 771.429 kb on + strand, within Psest_0703at 771.457 kb on + strand, within Psest_0703at 771.457 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.624 kb on + strand, within Psest_0703at 771.625 kb on - strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
767,909 - Psest_0701 0.60 -0.5
767,964 + Psest_0701 0.62 +1.4
768,051 + Psest_0701 0.66 +0.5
768,051 + Psest_0701 0.66 +0.7
768,051 + Psest_0701 0.66 +0.6
768,051 + Psest_0701 0.66 +3.5
768,051 + Psest_0701 0.66 +1.0
768,088 - Psest_0701 0.68 +0.4
768,159 + Psest_0701 0.71 -0.7
768,159 + Psest_0701 0.71 +1.5
768,159 + Psest_0701 0.71 -2.0
768,159 + Psest_0701 0.71 +1.8
768,159 + Psest_0701 0.71 +1.2
768,159 + Psest_0701 0.71 -0.1
768,159 + Psest_0701 0.71 +1.1
768,160 - Psest_0701 0.71 -1.8
768,160 - Psest_0701 0.71 +1.8
768,160 - Psest_0701 0.71 +0.2
768,189 + Psest_0701 0.72 +1.0
768,189 + Psest_0701 0.72 +0.2
768,190 - Psest_0701 0.72 +1.0
768,190 - Psest_0701 0.72 -1.0
768,190 - Psest_0701 0.72 -0.8
768,216 + Psest_0701 0.74 +3.0
768,216 + Psest_0701 0.74 +1.0
768,228 + Psest_0701 0.74 +1.0
768,228 + Psest_0701 0.74 +0.5
768,229 - Psest_0701 0.74 -2.4
768,229 - Psest_0701 0.74 -1.7
768,229 - Psest_0701 0.74 +1.0
768,331 - Psest_0701 0.79 -1.4
768,363 + Psest_0701 0.80 +0.3
768,363 + Psest_0701 0.80 +1.0
768,363 + Psest_0701 0.80 +1.2
768,364 - Psest_0701 0.80 -0.1
768,364 - Psest_0701 0.80 +0.9
768,364 - Psest_0701 0.80 +0.7
768,364 - Psest_0701 0.80 +0.4
768,390 - Psest_0701 0.81 -0.2
768,399 + Psest_0701 0.82 +0.6
768,400 - Psest_0701 0.82 +2.4
768,400 - Psest_0701 0.82 +0.0
768,400 - Psest_0701 0.82 +1.6
768,400 - Psest_0701 0.82 +0.7
768,400 - Psest_0701 0.82 -0.4
768,515 + Psest_0701 0.87 +0.5
768,839 - +2.6
768,839 - +0.1
768,953 + +1.5
768,953 + +1.1
769,723 + Psest_0702 0.43 +0.9
769,723 + Psest_0702 0.43 +1.3
769,724 - Psest_0702 0.44 +1.5
769,724 - Psest_0702 0.44 +0.8
770,378 - Psest_0702 0.77 +0.0
770,442 + Psest_0702 0.80 -1.7
770,566 - Psest_0702 0.86 -0.7
770,627 - Psest_0702 0.90 +1.0
770,653 + +0.8
770,654 - -0.1
770,654 - +0.2
770,726 - -1.5
771,044 + +1.0
771,045 - -1.0
771,101 + +0.0
771,101 + +1.0
771,101 + +1.0
771,101 + +0.5
771,101 + +1.2
771,101 + +0.5
771,101 + -0.2
771,101 + +1.0
771,101 + +1.6
771,101 + +1.0
771,101 + +2.5
771,101 + +0.8
771,102 - +1.0
771,102 - -0.4
771,102 - +1.3
771,102 - +0.6
771,102 - -1.8
771,102 - -0.2
771,102 - +0.1
771,102 - +0.6
771,197 + Psest_0703 0.14 -0.9
771,429 + Psest_0703 0.29 +1.2
771,429 + Psest_0703 0.29 -0.0
771,457 + Psest_0703 0.30 +0.6
771,457 + Psest_0703 0.30 -0.4
771,603 + Psest_0703 0.40 +0.0
771,603 + Psest_0703 0.40 +1.4
771,603 + Psest_0703 0.40 -0.5
771,604 - Psest_0703 0.40 +1.0
771,604 - Psest_0703 0.40 -0.2
771,604 - Psest_0703 0.40 -3.2
771,604 - Psest_0703 0.40 +0.4
771,624 + Psest_0703 0.41 -0.3
771,625 - Psest_0703 0.41 -0.4
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 +1.0
771,681 + Psest_0703 0.44 -0.3
771,681 + Psest_0703 0.44 -2.3
771,681 + Psest_0703 0.44 -1.5
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 -0.5
771,681 + Psest_0703 0.44 +0.4
771,681 + Psest_0703 0.44 +0.2
771,681 + Psest_0703 0.44 +2.6
771,681 + Psest_0703 0.44 +0.3
771,681 + Psest_0703 0.44 -0.5
771,681 + Psest_0703 0.44 +0.7
771,681 + Psest_0703 0.44 +0.5
771,681 + Psest_0703 0.44 +1.0
771,681 + Psest_0703 0.44 -0.6
771,681 + Psest_0703 0.44 -0.5
771,681 + Psest_0703 0.44 +0.3
771,681 + Psest_0703 0.44 +0.7
771,681 + Psest_0703 0.44 +1.8
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 +0.1
771,681 + Psest_0703 0.44 +0.0
771,681 + Psest_0703 0.44 -0.3
771,681 + Psest_0703 0.44 -0.2
771,681 + Psest_0703 0.44 -0.5
771,681 + Psest_0703 0.44 +1.4
771,681 + Psest_0703 0.44 -0.0
771,681 + Psest_0703 0.44 +0.0
771,681 + Psest_0703 0.44 +0.6
771,682 - Psest_0703 0.44 -0.7
771,682 - Psest_0703 0.44 -0.8
771,682 - Psest_0703 0.44 -0.1
771,682 - Psest_0703 0.44 -0.2
771,682 - Psest_0703 0.44 -0.8
771,682 - Psest_0703 0.44 -0.7
771,682 - Psest_0703 0.44 +0.6
771,682 - Psest_0703 0.44 -0.3
771,682 - Psest_0703 0.44 -2.7
771,682 - Psest_0703 0.44 -1.3
771,682 - Psest_0703 0.44 -2.4
771,682 - Psest_0703 0.44 +0.3

Or see this region's nucleotide sequence