Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0671

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0670 and Psest_0671 are separated by 196 nucleotidesPsest_0671 and Psest_0672 are separated by 154 nucleotides Psest_0670: Psest_0670 - ethanolamine permease, at 730,176 to 731,624 _0670 Psest_0671: Psest_0671 - NAD-dependent aldehyde dehydrogenases, at 731,821 to 733,341 _0671 Psest_0672: Psest_0672 - Alcohol dehydrogenase, class IV, at 733,496 to 734,644 _0672 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 730.839 kb on + strand, within Psest_0670at 730.972 kb on + strand, within Psest_0670at 730.978 kb on + strand, within Psest_0670at 731.141 kb on + strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.215 kb on + strand, within Psest_0670at 731.230 kb on - strand, within Psest_0670at 731.257 kb on + strand, within Psest_0670at 731.258 kb on - strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.468 kb on - strand, within Psest_0670at 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.558 kb on + strandat 731.558 kb on + strandat 731.558 kb on + strandat 731.559 kb on - strandat 731.849 kb on + strandat 731.879 kb on + strandat 731.930 kb on + strandat 731.930 kb on + strandat 731.930 kb on + strandat 731.958 kb on - strandat 731.966 kb on + strandat 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.149 kb on - strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671at 732.754 kb on - strand, within Psest_0671at 732.788 kb on - strand, within Psest_0671at 732.897 kb on - strand, within Psest_0671at 732.897 kb on - strand, within Psest_0671at 732.962 kb on + strand, within Psest_0671at 732.963 kb on - strand, within Psest_0671at 733.238 kb on + strandat 733.238 kb on + strandat 733.239 kb on - strandat 733.239 kb on - strandat 733.239 kb on - strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.334 kb on + strandat 733.335 kb on - strandat 733.405 kb on - strandat 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.776 kb on + strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.777 kb on - strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.830 kb on + strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.831 kb on - strand, within Psest_0672at 733.866 kb on + strand, within Psest_0672at 733.867 kb on - strand, within Psest_0672at 733.867 kb on - strand, within Psest_0672at 733.914 kb on + strand, within Psest_0672at 733.914 kb on + strand, within Psest_0672at 733.915 kb on - strand, within Psest_0672at 733.915 kb on - strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.040 kb on + strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.041 kb on - strand, within Psest_0672at 734.171 kb on + strand, within Psest_0672at 734.289 kb on + strand, within Psest_0672at 734.289 kb on + strand, within Psest_0672at 734.300 kb on - strand, within Psest_0672

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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730,839 + Psest_0670 0.46 -3.3
730,972 + Psest_0670 0.55 +1.2
730,978 + Psest_0670 0.55 +1.0
731,141 + Psest_0670 0.67 +1.0
731,142 - Psest_0670 0.67 -0.6
731,142 - Psest_0670 0.67 +1.0
731,142 - Psest_0670 0.67 -1.8
731,164 + Psest_0670 0.68 -1.6
731,164 + Psest_0670 0.68 -1.0
731,164 + Psest_0670 0.68 -0.3
731,164 + Psest_0670 0.68 +0.5
731,164 + Psest_0670 0.68 -0.5
731,164 + Psest_0670 0.68 -0.6
731,164 + Psest_0670 0.68 +1.0
731,165 - Psest_0670 0.68 -0.0
731,165 - Psest_0670 0.68 -2.2
731,165 - Psest_0670 0.68 -2.0
731,165 - Psest_0670 0.68 +0.6
731,165 - Psest_0670 0.68 -0.6
731,165 - Psest_0670 0.68 -1.3
731,165 - Psest_0670 0.68 -0.2
731,165 - Psest_0670 0.68 -1.0
731,165 - Psest_0670 0.68 -0.0
731,165 - Psest_0670 0.68 -2.8
731,165 - Psest_0670 0.68 -0.3
731,165 - Psest_0670 0.68 -1.8
731,165 - Psest_0670 0.68 -1.0
731,176 + Psest_0670 0.69 +1.4
731,176 + Psest_0670 0.69 -2.5
731,176 + Psest_0670 0.69 -0.1
731,176 + Psest_0670 0.69 -0.3
731,176 + Psest_0670 0.69 -0.6
731,176 + Psest_0670 0.69 +0.2
731,176 + Psest_0670 0.69 -0.6
731,176 + Psest_0670 0.69 -0.4
731,176 + Psest_0670 0.69 -1.0
731,176 + Psest_0670 0.69 -1.6
731,177 - Psest_0670 0.69 +0.3
731,177 - Psest_0670 0.69 -1.8
731,177 - Psest_0670 0.69 -0.6
731,177 - Psest_0670 0.69 -1.0
731,215 + Psest_0670 0.72 +0.3
731,230 - Psest_0670 0.73 -0.4
731,257 + Psest_0670 0.75 +0.7
731,258 - Psest_0670 0.75 -2.1
731,389 + Psest_0670 0.84 -0.7
731,389 + Psest_0670 0.84 +0.3
731,389 + Psest_0670 0.84 -1.4
731,389 + Psest_0670 0.84 -0.0
731,389 + Psest_0670 0.84 -1.6
731,389 + Psest_0670 0.84 -1.3
731,389 + Psest_0670 0.84 -0.7
731,389 + Psest_0670 0.84 -1.3
731,390 - Psest_0670 0.84 +0.7
731,390 - Psest_0670 0.84 +0.3
731,390 - Psest_0670 0.84 +1.0
731,390 - Psest_0670 0.84 -1.3
731,390 - Psest_0670 0.84 +1.0
731,390 - Psest_0670 0.84 +0.1
731,390 - Psest_0670 0.84 -2.1
731,468 - Psest_0670 0.89 -0.0
731,485 + +0.3
731,485 + +0.3
731,485 + +0.7
731,486 - -0.1
731,486 - -1.3
731,486 - -0.0
731,486 - -0.8
731,486 - +0.2
731,486 - -1.8
731,555 - +1.2
731,555 - +1.8
731,555 - -1.3
731,555 - -0.1
731,558 + -1.2
731,558 + +0.6
731,558 + +1.0
731,559 - +1.0
731,849 + -0.9
731,879 + -0.0
731,930 + -0.5
731,930 + -0.0
731,930 + +2.3
731,958 - -0.5
731,966 + -1.6
732,148 + Psest_0671 0.21 -0.6
732,148 + Psest_0671 0.21 -1.0
732,148 + Psest_0671 0.21 -0.1
732,148 + Psest_0671 0.21 -0.3
732,149 - Psest_0671 0.22 +1.1
732,191 + Psest_0671 0.24 -0.4
732,191 + Psest_0671 0.24 +0.4
732,191 + Psest_0671 0.24 +0.9
732,191 + Psest_0671 0.24 +0.6
732,191 + Psest_0671 0.24 +0.0
732,191 + Psest_0671 0.24 -0.2
732,191 + Psest_0671 0.24 +0.9
732,191 + Psest_0671 0.24 -0.1
732,191 + Psest_0671 0.24 +0.3
732,191 + Psest_0671 0.24 +0.2
732,191 + Psest_0671 0.24 -2.0
732,191 + Psest_0671 0.24 +0.4
732,191 + Psest_0671 0.24 -1.2
732,191 + Psest_0671 0.24 +1.6
732,192 - Psest_0671 0.24 -2.0
732,192 - Psest_0671 0.24 -1.0
732,192 - Psest_0671 0.24 -0.3
732,192 - Psest_0671 0.24 +0.6
732,192 - Psest_0671 0.24 +2.2
732,192 - Psest_0671 0.24 -0.9
732,192 - Psest_0671 0.24 -1.6
732,192 - Psest_0671 0.24 -0.3
732,192 - Psest_0671 0.24 +0.2
732,192 - Psest_0671 0.24 -0.6
732,192 - Psest_0671 0.24 -0.3
732,192 - Psest_0671 0.24 -1.0
732,192 - Psest_0671 0.24 -0.5
732,278 + Psest_0671 0.30 -1.8
732,278 + Psest_0671 0.30 +0.2
732,278 + Psest_0671 0.30 -0.9
732,401 + Psest_0671 0.38 +1.0
732,401 + Psest_0671 0.38 -1.1
732,401 + Psest_0671 0.38 +0.7
732,401 + Psest_0671 0.38 +3.5
732,401 + Psest_0671 0.38 -0.6
732,401 + Psest_0671 0.38 -1.4
732,401 + Psest_0671 0.38 -0.0
732,401 + Psest_0671 0.38 +0.2
732,401 + Psest_0671 0.38 -0.2
732,401 + Psest_0671 0.38 -1.3
732,401 + Psest_0671 0.38 -2.5
732,401 + Psest_0671 0.38 -0.2
732,401 + Psest_0671 0.38 -2.2
732,401 + Psest_0671 0.38 +0.4
732,402 - Psest_0671 0.38 -0.1
732,402 - Psest_0671 0.38 -0.1
732,402 - Psest_0671 0.38 -1.0
732,402 - Psest_0671 0.38 -0.5
732,402 - Psest_0671 0.38 +0.6
732,402 - Psest_0671 0.38 -0.6
732,402 - Psest_0671 0.38 +0.1
732,402 - Psest_0671 0.38 +0.6
732,402 - Psest_0671 0.38 -1.5
732,402 - Psest_0671 0.38 +0.4
732,402 - Psest_0671 0.38 -0.9
732,402 - Psest_0671 0.38 +0.0
732,530 + Psest_0671 0.47 -1.0
732,530 + Psest_0671 0.47 +0.3
732,530 + Psest_0671 0.47 -0.6
732,531 - Psest_0671 0.47 -0.9
732,531 - Psest_0671 0.47 +0.0
732,754 - Psest_0671 0.61 -1.1
732,788 - Psest_0671 0.64 -2.0
732,897 - Psest_0671 0.71 -1.0
732,897 - Psest_0671 0.71 -1.2
732,962 + Psest_0671 0.75 +0.1
732,963 - Psest_0671 0.75 +0.4
733,238 + -0.4
733,238 + -0.9
733,239 - -1.0
733,239 - -0.6
733,239 - +0.0
733,334 + -1.8
733,334 + -1.8
733,334 + -2.2
733,334 + +1.1
733,334 + -0.6
733,334 + +0.1
733,335 - -1.3
733,405 - -0.3
733,776 + Psest_0672 0.24 +0.4
733,776 + Psest_0672 0.24 +0.3
733,776 + Psest_0672 0.24 -2.6
733,776 + Psest_0672 0.24 +2.0
733,776 + Psest_0672 0.24 +0.0
733,777 - Psest_0672 0.24 +0.8
733,777 - Psest_0672 0.24 +0.2
733,777 - Psest_0672 0.24 -0.0
733,777 - Psest_0672 0.24 -0.4
733,777 - Psest_0672 0.24 +1.0
733,777 - Psest_0672 0.24 +0.1
733,777 - Psest_0672 0.24 -0.7
733,830 + Psest_0672 0.29 +0.7
733,830 + Psest_0672 0.29 +1.9
733,830 + Psest_0672 0.29 +0.2
733,830 + Psest_0672 0.29 +0.5
733,830 + Psest_0672 0.29 +0.3
733,831 - Psest_0672 0.29 -1.6
733,831 - Psest_0672 0.29 -0.7
733,831 - Psest_0672 0.29 +0.2
733,866 + Psest_0672 0.32 +0.9
733,867 - Psest_0672 0.32 +0.2
733,867 - Psest_0672 0.32 -0.5
733,914 + Psest_0672 0.36 +0.2
733,914 + Psest_0672 0.36 +1.6
733,915 - Psest_0672 0.36 +1.2
733,915 - Psest_0672 0.36 -2.4
734,040 + Psest_0672 0.47 +0.2
734,040 + Psest_0672 0.47 -0.7
734,040 + Psest_0672 0.47 +0.2
734,040 + Psest_0672 0.47 +0.0
734,040 + Psest_0672 0.47 +0.0
734,040 + Psest_0672 0.47 +0.4
734,040 + Psest_0672 0.47 +0.0
734,041 - Psest_0672 0.47 -2.1
734,041 - Psest_0672 0.47 +0.3
734,041 - Psest_0672 0.47 +0.7
734,041 - Psest_0672 0.47 -0.9
734,171 + Psest_0672 0.59 +1.0
734,289 + Psest_0672 0.69 +1.6
734,289 + Psest_0672 0.69 -1.3
734,300 - Psest_0672 0.70 -0.3

Or see this region's nucleotide sequence