Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0654 and Psest_0655 are separated by 1 nucleotides Psest_0655 and Psest_0656 are separated by 11 nucleotides Psest_0656 and Psest_0657 overlap by 22 nucleotides
Psest_0654: Psest_0654 - Methylase of chemotaxis methyl-accepting proteins, at 711,181 to 711,987
_0654
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Psest_0656: Psest_0656 - Methyl-accepting chemotaxis protein, at 712,498 to 714,144
_0656
Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369
_0657
Position (kb) 712
713
714
715 Strain fitness (log2 ratio) -2
-1
0
1 at 711.559 kb on + strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.744 kb on - strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.822 kb on - strand, within Psest_0654 at 711.831 kb on - strand, within Psest_0654 at 712.419 kb on + strand, within Psest_0655 at 712.419 kb on + strand, within Psest_0655 at 712.607 kb on - strand at 712.957 kb on + strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.579 kb on + strand, within Psest_0656 at 713.580 kb on - strand, within Psest_0656 at 713.580 kb on - strand, within Psest_0656 at 713.768 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.963 kb on + strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 713.964 kb on - strand, within Psest_0656 at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.008 kb on + strand at 714.252 kb on - strand at 714.580 kb on + strand, within Psest_0657 at 714.580 kb on + strand, within Psest_0657 at 714.580 kb on + strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.581 kb on - strand, within Psest_0657 at 714.929 kb on - strand, within Psest_0657
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 711,559 + Psest_0654 0.47 -1.1 711,559 + Psest_0654 0.47 +0.6 711,635 + Psest_0654 0.56 +0.2 711,635 + Psest_0654 0.56 +0.0 711,636 - Psest_0654 0.56 -0.5 711,636 - Psest_0654 0.56 +0.2 711,636 - Psest_0654 0.56 +0.0 711,743 + Psest_0654 0.70 +1.0 711,743 + Psest_0654 0.70 +0.0 711,744 - Psest_0654 0.70 -0.5 711,817 + Psest_0654 0.79 +0.1 711,817 + Psest_0654 0.79 -0.4 711,817 + Psest_0654 0.79 -0.1 711,818 - Psest_0654 0.79 +0.5 711,818 - Psest_0654 0.79 +0.2 711,818 - Psest_0654 0.79 -0.5 711,818 - Psest_0654 0.79 +1.5 711,818 - Psest_0654 0.79 -2.0 711,821 + Psest_0654 0.79 +0.1 711,821 + Psest_0654 0.79 +0.0 711,821 + Psest_0654 0.79 -0.4 711,822 - Psest_0654 0.79 -2.5 711,831 - Psest_0654 0.81 +0.4 712,419 + Psest_0655 0.86 +0.9 712,419 + Psest_0655 0.86 +0.8 712,607 - -0.1 712,957 + Psest_0656 0.28 -0.5 712,958 - Psest_0656 0.28 +0.6 712,958 - Psest_0656 0.28 -1.0 713,579 + Psest_0656 0.66 +0.2 713,579 + Psest_0656 0.66 +0.5 713,579 + Psest_0656 0.66 +0.4 713,579 + Psest_0656 0.66 +1.0 713,580 - Psest_0656 0.66 +0.2 713,580 - Psest_0656 0.66 -0.0 713,768 + Psest_0656 0.77 -0.2 713,963 + Psest_0656 0.89 -2.0 713,963 + Psest_0656 0.89 -0.1 713,963 + Psest_0656 0.89 +0.6 713,963 + Psest_0656 0.89 +0.2 713,964 - Psest_0656 0.89 -2.6 713,964 - Psest_0656 0.89 -0.8 713,964 - Psest_0656 0.89 +0.0 713,964 - Psest_0656 0.89 -0.4 714,008 + +0.3 714,008 + -0.6 714,008 + -0.6 714,008 + +0.3 714,008 + -0.3 714,252 - -1.3 714,580 + Psest_0657 0.20 -0.3 714,580 + Psest_0657 0.20 -1.1 714,580 + Psest_0657 0.20 +0.2 714,581 - Psest_0657 0.20 +0.0 714,581 - Psest_0657 0.20 -0.9 714,581 - Psest_0657 0.20 -1.4 714,581 - Psest_0657 0.20 +0.0 714,929 - Psest_0657 0.36 -1.1
Or see this region's nucleotide sequence