Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0652 and Psest_0653 are separated by 153 nucleotides Psest_0653 and Psest_0654 are separated by 19 nucleotides Psest_0654 and Psest_0655 are separated by 1 nucleotides
Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952
_0652
Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161
_0653
Psest_0654: Psest_0654 - Methylase of chemotaxis methyl-accepting proteins, at 711,181 to 711,987
_0654
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.265 kb on + strand, within Psest_0652 at 709.265 kb on + strand, within Psest_0652 at 709.661 kb on + strand, within Psest_0652 at 709.662 kb on - strand, within Psest_0652 at 709.768 kb on - strand, within Psest_0652 at 709.840 kb on + strand, within Psest_0652 at 709.852 kb on + strand, within Psest_0652 at 709.952 kb on + strand at 709.952 kb on + strand at 709.952 kb on + strand at 709.953 kb on - strand at 710.031 kb on - strand at 710.031 kb on - strand at 710.422 kb on + strand, within Psest_0653 at 711.114 kb on + strand at 711.115 kb on - strand at 711.170 kb on - strand at 711.184 kb on + strand at 711.332 kb on + strand, within Psest_0654 at 711.332 kb on + strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.744 kb on - strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.822 kb on - strand, within Psest_0654 at 711.831 kb on - strand, within Psest_0654
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 709,265 + Psest_0652 0.26 -0.8 709,265 + Psest_0652 0.26 -1.5 709,661 + Psest_0652 0.69 +0.5 709,662 - Psest_0652 0.69 +0.6 709,768 - Psest_0652 0.80 +0.0 709,840 + Psest_0652 0.88 +0.4 709,852 + Psest_0652 0.89 -1.1 709,952 + +0.4 709,952 + +0.5 709,952 + +0.7 709,953 - -1.1 710,031 - +0.4 710,031 - +2.4 710,422 + Psest_0653 0.30 -1.3 711,114 + +0.2 711,115 - -0.5 711,170 - -0.9 711,184 + -1.5 711,332 + Psest_0654 0.19 +0.9 711,332 + Psest_0654 0.19 -0.4 711,333 - Psest_0654 0.19 -1.3 711,333 - Psest_0654 0.19 -1.0 711,333 - Psest_0654 0.19 +0.4 711,559 + Psest_0654 0.47 -1.1 711,559 + Psest_0654 0.47 +0.6 711,635 + Psest_0654 0.56 +0.2 711,635 + Psest_0654 0.56 +0.0 711,636 - Psest_0654 0.56 -0.5 711,636 - Psest_0654 0.56 +0.2 711,636 - Psest_0654 0.56 +0.0 711,743 + Psest_0654 0.70 +1.0 711,743 + Psest_0654 0.70 +0.0 711,744 - Psest_0654 0.70 -0.5 711,817 + Psest_0654 0.79 +0.1 711,817 + Psest_0654 0.79 -0.4 711,817 + Psest_0654 0.79 -0.1 711,818 - Psest_0654 0.79 +0.5 711,818 - Psest_0654 0.79 +0.2 711,818 - Psest_0654 0.79 -0.5 711,818 - Psest_0654 0.79 +1.5 711,818 - Psest_0654 0.79 -2.0 711,821 + Psest_0654 0.79 +0.1 711,821 + Psest_0654 0.79 +0.0 711,821 + Psest_0654 0.79 -0.4 711,822 - Psest_0654 0.79 -2.5 711,831 - Psest_0654 0.81 +0.4
Or see this region's nucleotide sequence